Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05228 ATGGTTTTGCAATGTTGTAACAGCAAAACAAAGAGTCTTAATATTAACAACATTTGCTTCAGGCATTGCTTCTCCAAGACGTTCTTTGACCAGCAACGTTATCTTGGTGGTAGTACTGGTCAACATTATCTTGGCTTCTTTGAGCCACTAATTAACATTGTTGACTTAAGGTCAATCTCCATTCTTCATGTTTATTGTTTTGATCTAATTGTACGGTATAACCATTTCCCAAACTTGAGTTTTCTCATGGCTTCCCTGAGCCTTCTTATCCTCACTACACTCCTCTTTCTTCAACTTTTGTTAGTTTTTGCAAACATTAATCTGAATTCCACACTCTCCACCAATGACAACCTTGCATGGCTTTCACCTTCGGGTGAATTTGCTTATGGATTTCGCCAACTTAAGAATAGCACAAGCCTCTTCACACTTGCCATCTGGTATAACAAAATACCCCTCAAAACCATTGTTTGGAATGCAGAAGCAGAAGCACCAAAAGGATCACAGGTTCAACTCACATCACAAGGGCTCATGCTGACAAGTCCTGAAGCAGAGTCCCTATGGATGGCAAAACCAGACGCCACTTTTTCCTACGGAGCTATGCTTGACACTGGGAACTTTGTGCTTGTAAACGAACAATCTCAATCTGTTTTTGTATGGGAAAGTTTCAAGAATCCCACAGACACTTTGTTACCTGACCAGTCTCTGGAGCTAGATGTCAAGCTAACTTCTCGGTTCACAGAAACCAATTACACAACAGGAAGGTTCCAACTTTATTTTGAGGAGGACAATAATGTCTTGTTGAGTCCCCTTGCTTGGCCTTCTCAATTTCGTTATGGTTCCTATTATAAAATTGATGCTTCTGGCTCTGCTTCAAGATTGGTGTTTCATAAATCAGGAGATATTTATGTAGAGACAACAAATGGGACTAAAGTGCAACCTCAAGGTGCAAAATGGGAATACATAACTCTCAATCCTAAGGTGTATTATTACAGAGCAACACTTGATTTCCATGGAGTTTTCACGCAATATGCTTATCCAAAGGACTCCACTTCAGAGCAAGAATGGAGAATTTTGAGGTATGTTCCTGAAAACATATGCAATGCAATAACCAATGAATTGGGTAAAGGTTCTTGTGGGTATAATAGCTACTGCTCCATGGAAAATCAGAGCCAGAGGCCTACTTGCAAATGCCCTGATGGGTATTCACTTGTGGATCCAAGTAATGATTTTGGTGGCTGCCAACTCAAATCCACCCTGGTTTGTGGAGCTGATGTTGAAGCAAGGCCAGAAGACCTATATGAATTACTTGTGGCAAGAGATATAAATTTTCCTTTTGGAGATTATGAAAGGATAGAACCTTTTTCTCAAGAAGACTGCCAACAATCCTGCTTTCAAGATTGCATGTGTGCTATTGCACATTATAATGTGGATGCACGCCGTTGTTGGAAGAAAAGAATACCCCTTCTTAATGGAAGAGTAGATAGAGGCCCAGATTTGGTATTTATCAAAACAAGAGTTAGTCCTCTGAGAAACTTTGATAATGGTACAAACAAGGAACTTCCCACTGGTCTTGATTCAAAGAAAGCTAAGACAATTCTTCTGGGGCCACTTATTGGCTCCCTTGTTTTTAACAGTTTACTCCTTCTGGCTGGCTATGGTTGCAAACTAGATCATGTGGTTGCCGTCAAGAAATTGGACAGATTAGCAGAAGAAGGAAGAGATAAGGAATTTAAGACTGAGTTAAGTGCCATCAGTAAAACCTGCCACAAAAATCCGGTAAGGTTGATTGGATTTTGTGATGAGGGGATCCACAAACTTCTGGTCTATGAGTTCATGAGCAATGGCACTCTTGCAAACATCCTATTTGCACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAGGGGATTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCCCAAAATGTACTCATAGATGACCATTTCACTGCTAAGATCTCTGATTTTGGGTTGGCCAAGTTGTTATTGCTAAACCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGGTATGTAGCACCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGTTGGAAATCATTTGCTGCAGAAGAAATGAGCTGCTGATGGAGTCTCATGAGGAGAAAGCAATATTGTCAGATTGGGCTTATGATTGCTATATGGAAGGAAGAATAGATGCTCTGTTGGATGATGATGACAAGGAGGCTAGGGCTGACCATGACAGGTTACAAAGGTGGGTAAAGATAGCAATTTGGGGCATTCAAGAGCATCATGAAATCAGGCCAACAATGGGGATGGTCATGCAAATGCTCCAAGGCTTTGTTCAAGTCCCTGATCCACCATCTCCTTCTTCCTTCAATTAG 2466 0.4079 MVLQCCNSKTKSLNINNICFRHCFSKTFFDQQRYLGGSTGQHYLGFFEPLINIVDLRSISILHVYCFDLIVRYNHFPNLSFLMASLSLLILTTLLFLQLLLVFANINLNSTLSTNDNLAWLSPSGEFAYGFRQLKNSTSLFTLAIWYNKIPLKTIVWNAEAEAPKGSQVQLTSQGLMLTSPEAESLWMAKPDATFSYGAMLDTGNFVLVNEQSQSVFVWESFKNPTDTLLPDQSLELDVKLTSRFTETNYTTGRFQLYFEEDNNVLLSPLAWPSQFRYGSYYKIDASGSASRLVFHKSGDIYVETTNGTKVQPQGAKWEYITLNPKVYYYRATLDFHGVFTQYAYPKDSTSEQEWRILRYVPENICNAITNELGKGSCGYNSYCSMENQSQRPTCKCPDGYSLVDPSNDFGGCQLKSTLVCGADVEARPEDLYELLVARDINFPFGDYERIEPFSQEDCQQSCFQDCMCAIAHYNVDARRCWKKRIPLLNGRVDRGPDLVFIKTRVSPLRNFDNGTNKELPTGLDSKKAKTILLGPLIGSLVFNSLLLLAGYGCKLDHVVAVKKLDRLAEEGRDKEFKTELSAISKTCHKNPVRLIGFCDEGIHKLLVYEFMSNGTLANILFAQPKPIWNLRVGFALGIARGLVYLHEECDTPIIHCDIKPQNVLIDDHFTAKISDFGLAKLLLLNQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNELLMESHEEKAILSDWAYDCYMEGRIDALLDDDDKEARADHDRLQRWVKIAIWGIQEHHEIRPTMGMVMQMLQGFVQVPDPPSPSSFN. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05228 821 Pfam Protein kinase domain 558 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05228 821 Gene3D - 103 223 IPR036426 -
Seca6g05228 821 Gene3D - 225 352 IPR036426 -
Seca6g05228 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Seca6g05228 821 PIRSF SRK 75 556 IPR024171 GO:0004674
Seca6g05228 821 PIRSF SRK 552 821 IPR024171 GO:0004674
Seca6g05228 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 141 268 IPR036426 -
Seca6g05228 821 FunFam Serine/threonine-protein kinase 226 369 - -
Seca6g05228 821 SUPERFAMILY Protein kinase-like (PK-like) 557 805 IPR011009 -
Seca6g05228 821 ProSiteProfiles Protein kinase domain profile. 532 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05228 821 Pfam D-mannose binding lectin 154 240 IPR001480 -
Seca6g05228 821 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 558 817 - -
Seca6g05228 821 SMART serkin_6 532 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05228 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 612 813 - -
Seca6g05228 821 Pfam S-locus glycoprotein domain 315 402 IPR000858 GO:0048544
Seca6g05228 821 Gene3D Transferase(Phosphotransferase) domain 1 613 812 - -
Seca6g05228 821 ProSiteProfiles Bulb-type lectin domain profile. 103 221 IPR001480 -
Seca6g05228 821 SMART blect_4 109 225 IPR001480 -
Seca6g05228 821 Gene3D Phosphorylase Kinase; domain 1 550 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05228 Seca-Chr6 119213802 119216414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05228 559 807 Receptor kinase-like Gene Family AT5G16000 40.400 1.12e-53 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca6g05228 Pkinase 6.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05228 - - lja:Lj2g3v1989170.1 897.886