Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05206 ATGTTGTGTTGTGGTGTGTTATCTTTGGGTGACAGACAGAGGTTAGAGCATAGAAGAATGGAGGGTGAACGCAAACGCTTGACTACGCCACGGCTTGATCGGCGAAACGCCATGAAGAACATCGATTACCAAGTGGAAGTGGAAGATGATGAGGTGATGAATGTGTATTCTTCATCATCAGCTTCTTTGCTGAACAAAACGAGCTTCCGTGTGAAGGGAATTGATGGTGAATTCGACCATATATTCCGCAGTCTTGGCTTCTCTGGACCTGAAGACTTTGCCATCCCAACTTCAGCTTGGGAACAATCCCAAAAGGCTCGCTTTTCTTCTCCAATTCCCAACAAATTCAATCCAAAACTTGAACTTCAAACTGAAAAGGATATGAATAACGTTTCCTCTGAGAACAGAGATGGGGGGATCAAGGGTGTTAGGCCTCCGGTGTTGCGGGCAATTGTTGCTGCTGACGAGCTAGTGACTCCCCCTTTAGAAGAAGAGGAAAGGGATGTGCTAATTTGTGATTGTAGTGATGATGATGTTGGTGAAAAGGCTTTTTCTGATAGGGATATGGTTGAAGAGTACTCCAACTCCATGGATGATGTGTCCCCATCATCATCAATATCATATGGATATGATGGGTCCTTTAGACAGATTTTCGGGTCATGGCAAAAGGGCGACATTTTAGGGAAAGGCTCCTTTGGAACTGTCTATGAAGGCTTCACTCATGATGGGATATTTTTTGCAGTAAAGGAAGTTTCTTTGCTGGATGATGGAAGCCAAGGCAAACAGAGCATTTTTCAACTTCAGCAGGAAATATGTCTTTTGAGCCAATTCAAACACGACAACATAGTTCGATATATCGGTACTGACAAGATTAATGAAAAATTCAAGTGTTTTCTCCTCTTTACTTTTTTTATTTCTCAGGACGATGATAAGCTGTATATCTTTCTTGAGCTTGTAACAAAAGGATCATTGGCAAGTCTCTATCAAAAATATCGTTTAAAGGACTCTCAAGTTTCTGTATACACAAGACAAATTTTAAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTCCACAGGGACATCAAGTGTGCCAATATACTGGTTGATGCAAATGGGTCTGTCAAGCTTGCAGATTTTGGGCTGGCAAAGGCAACCAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAGGAATCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTAGAGATGTTGACCCGGCAACCTCCTTATTCTCATTTGGAAGGAATGCAAGCGTTATTTAGGATTGGGAATGGTCAACCTCCACCTGTTTCGGAATCTTTATCCAAAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAATAAACGGCCAACTGCTGCTCAGCTATTGGATCATCCATTTGTAAAGAGATCACTTTTTTCTCCTATAAGTCCTGTTTCTCCACGTATTAATCTTATACTGTCTTGA 1536 0.4154 MLCCGVLSLGDRQRLEHRRMEGERKRLTTPRLDRRNAMKNIDYQVEVEDDEVMNVYSSSSASLLNKTSFRVKGIDGEFDHIFRSLGFSGPEDFAIPTSAWEQSQKARFSSPIPNKFNPKLELQTEKDMNNVSSENRDGGIKGVRPPVLRAIVAADELVTPPLEEEERDVLICDCSDDDVGEKAFSDRDMVEEYSNSMDDVSPSSSISYGYDGSFRQIFGSWQKGDILGKGSFGTVYEGFTHDGIFFAVKEVSLLDDGSQGKQSIFQLQQEICLLSQFKHDNIVRYIGTDKINEKFKCFLLFTFFISQDDDKLYIFLELVTKGSLASLYQKYRLKDSQVSVYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGNGQPPPVSESLSKDARDFILKCLQVNPNKRPTAAQLLDHPFVKRSLFSPISPVSPRINLILS. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05206 511 SMART serkin_6 221 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05206 511 ProSiteProfiles Protein kinase domain profile. 221 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05206 511 ProSitePatterns Protein kinases ATP-binding region signature. 227 249 IPR017441 GO:0005524
Seca6g05206 511 Gene3D Transferase(Phosphotransferase) domain 1 220 502 - -
Seca6g05206 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Seca6g05206 511 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 136 495 - -
Seca6g05206 511 SUPERFAMILY Protein kinase-like (PK-like) 217 503 IPR011009 -
Seca6g05206 511 Pfam Protein kinase domain 222 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05206 511 FunFam Protein kinase byr2-like 324 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05206 Seca-Chr6 119088799 119093032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05206 194 495 MAP Kinase Kinase Kinase AT4G08500 63.487 4.53e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca6g05206 Pkinase 3.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05206 - K13414 gmx:100806902 618.616