Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05204 ATGGAGCAGCCACAGCTCTTAGTGGACCAAAACTTCCCCCTCTTCAAATCAACCCGCAAACCCTCCAAAAACCCCTCAGCCTCCGCCAACAACAAAAATCCTAACTCCCATGCCAAAAACCTGAATTCTGATGCCGATAACTTCAAAGACACCGCTCCAGCTGCCACGTTCGCCGATCTTGGACTGGCTGAATGGGCGGTGCAGACGTGCAAGGCGCTCAGAATGCAGGTGCCGCGGCGCGTGCAGCGGCAGTGCATCCCGAGGGTCCTGGAGGGCCGCCACGTACTCGGCATCGACGAGACTGGCAGCGGCAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTTGCCCTTGTGGTGACTCCCACACGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCCGCCTCCGCATCGCCGTGGTGGTTGGCGGCATGGACATGCTCAAACAGGCCAGGGACTTGGTCGCCAGGCCTCACATTGTCATCGCCACCCCCGGGAGAATCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTTGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCAGAAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACAAATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTTATTCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGATGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACACAGGTTCAGAGGCTCGAGGCTCTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGAAATTATATCCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGTTTGGCTCCCACATCTGCATTAACAGTGACAAAAGGCCTTTAATGTGCCAATGCAGGCATTGTGTTAAGGATCCCTATCTCAAATGGACAATAAGAATGATGTTGATCTCATTCATGAAATAG 1338 0.4851 MEQPQLLVDQNFPLFKSTRKPSKNPSASANNKNPNSHAKNLNSDADNFKDTAPAATFADLGLAEWAVQTCKALRMQVPRRVQRQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIAVVVGGMDMLKQARDLVARPHIVIATPGRIKLLLEDNPDIPPIFSRIKFVVLDEADQVLDVDFQEELKFIFQCLPENRQNLFFSATTTNNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMGIRSAIVFTNTRRDCHRLSLMLDVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQFGSHICINSDKRPLMCQCRHCVKDPYLKWTIRMMLISFMK. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05204 445 CDD SF2_C_DEAD 271 403 - -
Seca6g05204 445 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 259 IPR014001 -
Seca6g05204 445 SMART helicmild6 313 394 IPR001650 -
Seca6g05204 445 MobiDBLite consensus disorder prediction 1 46 - -
Seca6g05204 445 Pfam Helicase conserved C-terminal domain 287 394 IPR001650 -
Seca6g05204 445 Gene3D - 258 414 IPR027417 -
Seca6g05204 445 Gene3D - 17 257 IPR027417 -
Seca6g05204 445 SMART ultradead3 74 274 IPR014001 -
Seca6g05204 445 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 444 IPR001650 -
Seca6g05204 445 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 408 - -
Seca6g05204 445 Pfam DEAD/DEAH box helicase 80 248 IPR011545 GO:0003676|GO:0005524
Seca6g05204 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 405 IPR027417 -
Seca6g05204 445 CDD DEADc_DDX49 57 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05204 Seca-Chr6 119069388 119075266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05204 56 427 Eukaryotic Initiation Factors Gene Family AT3G13920 32.454 6.37e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05204 K14778 - gmx:100804060 610.527