Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05196 ATGGCGATGGCGTCATCGAGAAGTAGGAATGAGGATCTGCGAGGAGAGTGTTCTCTTTCAGCTGATGAGGTTTGGAAGGAGATCGTCGCCGGCAGCACTGATCAACAGAATATGACAGTAACACTTGAGGATTTCCTCACCAAGCCTCCTGCAGTCACAGACCAAGACACCATGCTCCTCCTCCCTCCTCAGACTCAAACTCAAAGCAATGAGAAGAATGGAATTGTTGCTGTTGGAGGAATTAGGGGAGGAAAAAGGAGGGCGGTGGCTGTGGAGGAAAGCCTTGATAAGGCCACTCTTCAGAAACAGAGAAGAATGATCAAAAACAGAGAGTCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCTTACACACTTGAGCTAGAGTCTCTGGTTGTACAACTGGAGGAAGAGAATGCTCGATTGCAGAGGGAAGAGGCTGAAAAGAAGAAGCAGAGATTTAACCAGGTATCGTAA 474 0.4895 MAMASSRSRNEDLRGECSLSADEVWKEIVAGSTDQQNMTVTLEDFLTKPPAVTDQDTMLLLPPQTQTQSNEKNGIVAVGGIRGGKRRAVAVEESLDKATLQKQRRMIKNRESAARSRERKQAYTLELESLVVQLEEENARLQREEAEKKKQRFNQVS. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05196 157 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 100 152 - -
Seca6g05196 157 Pfam bZIP transcription factor 98 151 IPR004827 GO:0003700|GO:0006355
Seca6g05196 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700|GO:0006355
Seca6g05196 157 SUPERFAMILY Leucine zipper domain 101 151 IPR046347 GO:0003700|GO:0006355
Seca6g05196 157 CDD bZIP_plant_BZIP46 101 147 - -
Seca6g05196 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 151 IPR004827 GO:0003700|GO:0006355
Seca6g05196 157 SMART brlzneu 97 155 IPR004827 GO:0003700|GO:0006355
Seca6g05196 157 Coils Coil 120 156 - -
Seca6g05196 157 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 149 IPR043452 GO:0003700|GO:0045893
Seca6g05196 157 Gene3D - 100 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05196 Seca-Chr6 119033409 119035949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05196 20 156 bZIP Transcription Factor Family AT5G44080 43.860 2.88e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca6g05196 bZIP_1 9.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05196 K14432 - rvl:131308838 143.28