Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05192 ATGCTGAGCTCATTTCAATTTTTGAAGTCTTTTTTATTTACTTTGACTTTTGCAGCTTTGTTAGTTGAAAATGGGAAATTCCTCCTTTCTGCTAAGAGGACGCGAAGAACAACTTACACCGAGTATGTCATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGATCAAACTTTCTTGGTACAAAATTCATTATATATGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGCAAGACGAGCCGCAGATTTTATTCTAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAACGTGCTTGGAACTCGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAGCTTCAGCACTTGATGCGGGTGGCACTGTTCCTGGCCAACCAGAGCTCCTTCCCCGTTCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCAATCGAATTCAGCAGTGCACGTTTTTCTGAGATTGGGGGATCCTGTAATGAGGATGAGGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCGCCAAGGTGGCATGAACAATTACAATGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCATCGGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCTGGAGCACCCACACCATCTCAACCAGCTCCACCAGAGCATGATAAAATTATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACGATGGATTATCGGTATCCCTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 903 0.4352 MLSSFQFLKSFLFTLTFAALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDEDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05192 300 PRINTS Tubby superfamily signature 278 300 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 204 221 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 42 58 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 110 137 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 222 238 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 58 82 IPR000007 -
Seca6g05192 300 PRINTS Tubby superfamily signature 257 276 IPR000007 -
Seca6g05192 300 ProSitePatterns Tub family signature 2. 285 300 IPR018066 -
Seca6g05192 300 PANTHER TUBBY-RELATED 13 298 - -
Seca6g05192 300 Gene3D Tubby Protein; Chain A 6 294 IPR025659 -
Seca6g05192 300 SUPERFAMILY Tubby C-terminal domain-like 15 300 IPR025659 -
Seca6g05192 300 Pfam Tub family 18 295 IPR000007 -
Seca6g05192 300 ProSitePatterns Tub family signature 1. 222 235 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05192 Seca-Chr6 118994765 118999613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05192 19 300 TUB Transcription Factor Family AT1G43640 69.048 6.15e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca6g05192 Tub 6.2e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05192 K19600 - gmx:100814578 539.265