Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05180 ATGGCTGATGCCGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCAGGTGACGATGCTCCTAGGGCTGTGTTCCCCAGTATCATTGGGCGACCTCGTCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCTTACGTGGGTGATGAAGCCCAGTCAAAAAGGGGTATACTCACCTTGAAGTACCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCCGTGCTTCTTACTGAGGCACCACTCAATCCCAAGGCTAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCGGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTACGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCGTGATTTGACGGAGTACTTGGTGAAAATTCTTACTGAGAGAGGATACTCCTTCAGTACCTCCGCCGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAACAAGAAATGGAGACTACTAAGACCAGTTCTGCAGTGGAGAAGAGCTATGAATTACCTGATGGACAGGTCATTACAATAGGTGCTGAGAGATTCCGGTGCCCAGAAGTACTCTTCCAGCCTTCTCTAATCGGTATGGAAGCTCCTGGAATTCATGAAACCACATACAACTCGATCATGAAATGTGATGTTGATATTAGGAAGGATCTGTATGGAAATATTGTGCTTAGTGGTGGGTCTACTATGTTTCCGGGAATTGCTGATCGTATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGTGGTTCAATCTTGGCATCACTTAGCACCTTTCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATTGTTCACCGGAAGTGCTTCTAA 1134 0.4612 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05180 377 Gene3D - 140 340 - -
Seca6g05180 377 Pfam Actin 5 377 IPR004000 -
Seca6g05180 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Seca6g05180 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Seca6g05180 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Seca6g05180 377 PANTHER ACTIN 9 370 IPR004000 -
Seca6g05180 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Seca6g05180 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Seca6g05180 377 FunFam Actin, muscle 182 273 - -
Seca6g05180 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Seca6g05180 377 SMART actin_3 7 377 IPR004000 -
Seca6g05180 377 FunFam Actin, alpha skeletal muscle 3 163 - -
Seca6g05180 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Seca6g05180 377 Gene3D - 10 371 - -
Seca6g05180 377 PRINTS Actin signature 51 62 IPR004000 -
Seca6g05180 377 PRINTS Actin signature 238 254 IPR004000 -
Seca6g05180 377 PRINTS Actin signature 63 85 IPR004000 -
Seca6g05180 377 PRINTS Actin signature 142 161 IPR004000 -
Seca6g05180 377 PRINTS Actin signature 28 37 IPR004000 -
Seca6g05180 377 PRINTS Actin signature 117 130 IPR004000 -
Seca6g05180 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Seca6g05180 377 FunFam Actin, alpha skeletal muscle 255 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05180 Seca-Chr6 118864831 118867718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05180 1 377 Cytoskeleton Gene Families AT3G12110 94.430 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05180 K10355 - gmx:100778206 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05180 6 118864831 118867718 Seca6g05180 6 118864831 118867718 ECH