Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05165 ATGGGGGATGTGAACCTTCCACCGGGGTTTCGGTTTTATCCAACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGAGCTCTACTCATTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTATAGCAGAAGGACACAAAATAGGGTGAGTGAGAATGGGTATTGGAAGGCAACGGGAATGGAAGAAGCAGTGGTTAGTAGCACAAACAATAAGAGAGTTGGCATCAAGAAATATTTTGTCTTCCATTTGGGAGAACCTCCTTCTGCTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCACCTTCCTCTTCAAACAGATCATCCAAAAGGAAACCACACCCCAAAACAGTCAGTACTGATTATAGCAAATGGGTGATATGTCGTGTTTATGAGCGCAACGGGGATGGTGATGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGGCATTGGATGATCTTGACGAAATAAGCTTACCAAATTAA 576 0.4306 MGDVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLELYSFDPWELDGRALAEGKQWYYYSRRTQNRVSENGYWKATGMEEAVVSSTNNKRVGIKKYFVFHLGEPPSAIKTNWIMQEYRLSDSAPSSSNRSSKRKPHPKTVSTDYSKWVICRVYERNGDGDDGTELSCLDEVFLALDDLDEISLPN. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05165 191 PANTHER NAC TRANSCRIPTION FACTOR 56 6 165 - -
Seca6g05165 191 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Seca6g05165 191 MobiDBLite consensus disorder prediction 127 146 - -
Seca6g05165 191 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Seca6g05165 191 FunFam NAC domain-containing protein 104 15 164 - -
Seca6g05165 191 ProSiteProfiles NAC domain profile. 6 161 IPR003441 GO:0003677|GO:0006355
Seca6g05165 191 Pfam No apical meristem (NAM) protein 7 125 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05165 Seca-Chr6 118747145 118748495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05165 2 179 NAC Transcription Factor Family AT1G61110 42.105 1.70e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g05165 NAM 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05165 - - adu:107468597 326.635