Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05160 ATGGAGCGAGTGACTTTATCTTCTACTGCTTCCTTTCTTGTTTGGGCAATTTTGGTGCTTGATTTGGTGCTTAAGGCTTCTGGCAATGCGGAAGGTGATGCCTTGAATACATTGAAGAGCAACTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAATGGTGATAACAGCGTGACTCGGGTTGATCTTGGAAATGCAGAGCTTTCTGGTACACTGGTTCCACAACTTGGTCAGCTCACAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCGAATACATTGGGCAACCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGTCTGGAGGCATTCCTATGTCTTTGACAAACGTTGCTTCACTGCAAGTTCTCTCTGGATTCCTAGGAAGAAGCAGAAAGAGGAAAAAGAAGAGAACTTGGAGCTGCCCAGAGTTTGATTTTGGCATAAAATCAAGTTCACTGGGATTTTCGGTTGGTCAACAAGGTCAAGATGCTGCTGAGCTTGATGGAAACATGGAGCGAGTGACTTTATCTTCTACTGCTTCCTTTCTTGTTTGGGCAATTTTGGTGCTTGATTTGGTGCTTAAGGCTTCTGGCAATGCGGAAGGTGATGCCTTGAATACATTGAAGAGCAACTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCCTGCACGTGGTTTCATGTTACATGCAATGGTGATAACAGCGTGACTCGGGTTGATCTTGGAAATGCAGAGCTTTCTGGTACACTGGTTCCACAACTTGGTCAGCTCACAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATCCCAGACGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCGAATACATTGGGCAACCTTGGAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGTCTGGAGGCATTCCTATGTCTTTGACAAACGTTGCTTCACTGCAAGTTCTTGATCTCTCAAACAACCATCTATCAGGGGAGGTCCCAGTAAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCAGAACAATCCAGAATTGAAACAACCAAACACCACTCGAACTACACCAATTTCTCCACCGTCATCAGGTTCTTCAGGTGGCAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCCGGTGCTGCTCTGCTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCCAGCTTAAAAGGTTTTCTCTACGTGAGCTGCAAGTTGCAACGGATAATTTCAGTAACAAACATATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAAGGTGGGGAGCTGCAATTTCAAACAGAGGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTACTTCGGCTTCGTGGTTTTTGCATGACACCTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAATCTCAACCACCACTTGACTGGCCAATACGGAAGCGTATTGCTCTGGGATCTGCCAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACTACTGCTGTACGTGGTACCATTGGGCACATAGCACCAGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCACGACTTGCCAATGATGATGATGTCATGTTACTTGATTGGGTTAAAGGACTTCTGAAAGACAAGAAGTTGGAAACATTGGTAGATGCAGATTTACAGGGAAATTATAATGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGGTCTCCTATGGAAAGACCCAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAGCAATGGCAGAAAGAGGAGATGTTCCGGCAAGATTTTAACAACAACATGCATCACCCTAATGCAAATTGGATATTAGACTCAACTTCACATATCCAGGCAGATGAGCTATCAGGTCCTAGATGA 2508 0.4278 MERVTLSSTASFLVWAILVLDLVLKASGNAEGDALNTLKSNLLDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNAELSGTLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNNLTGPIPNTLGNLGKLRFLRLNNNTLSGGIPMSLTNVASLQVLSGFLGRSRKRKKKRTWSCPEFDFGIKSSSLGFSVGQQGQDAAELDGNMERVTLSSTASFLVWAILVLDLVLKASGNAEGDALNTLKSNLLDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNAELSGTLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNNLTGPIPNTLGNLGKLRFLRLNNNTLSGGIPMSLTNVASLQVLDLSNNHLSGEVPVNGSFSLFTPISYQNNPELKQPNTTRTTPISPPSSGSSGGSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERQESQPPLDWPIRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYNDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNNNMHHPNANWILDSTSHIQADELSGPR. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05160 835 FunFam Somatic embryogenesis receptor kinase 1 27 175 - -
Seca6g05160 835 FunFam Somatic embryogenesis receptor-like kinase 1 588 805 - -
Seca6g05160 835 FunFam Somatic embryogenesis receptor kinase 1 246 433 - -
Seca6g05160 835 Gene3D Phosphorylase Kinase; domain 1 480 587 - -
Seca6g05160 835 MobiDBLite consensus disorder prediction 419 445 - -
Seca6g05160 835 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 231 796 - -
Seca6g05160 835 FunFam Somatic embryogenesis receptor kinase 1 480 587 - -
Seca6g05160 835 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515
Seca6g05160 835 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Seca6g05160 835 Pfam Protein kinase domain 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05160 835 SUPERFAMILY L domain-like 250 412 - -
Seca6g05160 835 CDD STK_BAK1_like 517 788 - -
Seca6g05160 835 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Seca6g05160 835 Pfam Leucine rich repeat N-terminal domain 248 287 IPR013210 -
Seca6g05160 835 Gene3D Transferase(Phosphotransferase) domain 1 588 805 - -
Seca6g05160 835 SUPERFAMILY L domain-like 31 173 - -
Seca6g05160 835 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Seca6g05160 835 Gene3D Ribonuclease Inhibitor 247 432 IPR032675 -
Seca6g05160 835 SUPERFAMILY Protein kinase-like (PK-like) 490 786 IPR011009 -
Seca6g05160 835 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Seca6g05160 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Seca6g05160 835 SMART serkin_6 511 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05160 835 ProSiteProfiles Protein kinase domain profile. 511 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05160 835 SMART LRR_typ_2 313 336 IPR003591 -
Seca6g05160 835 SMART LRR_typ_2 142 170 IPR003591 -
Seca6g05160 835 SMART LRR_typ_2 94 118 IPR003591 -
Seca6g05160 835 SMART LRR_typ_2 385 410 IPR003591 -
Seca6g05160 835 SMART LRR_typ_2 337 361 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05160 Seca-Chr6 118679763 118697967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05160 232 835 Receptor kinase-like Gene Family AT4G33430 78.560 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca6g05160 Pkinase 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05160 K13416 - gmx:100800522 1093.57