Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05153 ATGGATGCTTTATCCTTAAGCTCAAGCCTTATCATTTCCAAACCAATTTCTTTCCTTTCATCAGTTTCACTCTCAAAATCATCTCGTACGCAGTTTTCTGTTTCATGTAGAGCCACAAAGCTTCCAGGTCATGAAAACTACTACAAGATACTGTCTTTGAGTCCCAATAGTGCAACCATGGATGACATAAAGAGAGCGTATAGATCAATGGCTCTTCGGTACCATCCTGATGTGTGCCATGATCGTTCCAAGAAAGAGGAGTCGACGAGGATGTTTGTGCAGTTCAATGCAGCTTACAAGACGTTGTCGAATCCCAGGCTTCGAGCAGAGTATGACTATGAATTGGGTTTGAGAAGCAAAATGGGTGTTGGTGAAAAGAGGTGGGAGGAGCAAGTGGCTGAGTTAAAGAGAAGGTCTCAAAGACGTATGGCCCAAAAGGGAGGAACATGGGGCAGTACAATGAGGGCCCAAAACACAAAAGATCACAACTAG 492 0.439 MDALSLSSSLIISKPISFLSSVSLSKSSRTQFSVSCRATKLPGHENYYKILSLSPNSATMDDIKRAYRSMALRYHPDVCHDRSKKEESTRMFVQFNAAYKTLSNPRLRAEYDYELGLRSKMGVGEKRWEEQVAELKRRSQRRMAQKGGTWGSTMRAQNTKDHN. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05153 163 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 161 - -
Seca6g05153 163 ProSiteProfiles dnaJ domain profile. 46 115 IPR001623 -
Seca6g05153 163 SUPERFAMILY Chaperone J-domain 37 115 IPR036869 -
Seca6g05153 163 SMART dnaj_3 45 107 IPR001623 -
Seca6g05153 163 Pfam DnaJ domain 46 112 IPR001623 -
Seca6g05153 163 PRINTS DnaJ domain signature 49 67 IPR001623 -
Seca6g05153 163 PRINTS DnaJ domain signature 67 82 IPR001623 -
Seca6g05153 163 PRINTS DnaJ domain signature 87 107 IPR001623 -
Seca6g05153 163 CDD DnaJ 46 104 IPR001623 -
Seca6g05153 163 Gene3D DnaJ domain 32 146 IPR036869 -
Seca6g05153 163 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05153 Seca-Chr6 118618252 118618743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05153 47 112 C2H2 Transcription Factor Family AT1G74250 36.765 1.99e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05153 - - gmx:100783590 182.57