Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05150 ATGGCAGCTGCAACATCTGGTGCTGTGTTATCTTCCTTCTTATGTGGAGGGAAAAGCAGCCAAGCCCTGCTTGCTACTGCTATTGGAGGCAAAGTTGGTGCTGCTGTTAGTCCTAAAAGAGTTATTGTGGCTGCTGCTGCTGCACCAAAGAAGTCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCATCGACCCAGAATGGCTCGATGGATCGCTACCAGGTGACTATGGTTTTGACCCACTTGGCCTAGGCAAGGACCCAGCATTCCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGGAGGTGGGCAATGGCTGCAGTTGTAGGAATCTTTGTTGGCCAGGCCTGGAGTGGAGTTCCATGGTACGAGGCTGGAGCTGACCCCAATGCAATTGCACCTTTCTCCTTTGGTTCTCTCCTGGGCACACAGTTGCTTCTCATGGGATGGGTAGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACCGCCGAGAACTTTGCCAATGCCACAGGTGATCAAGGCTACCCTGGGGGCAAATTCTTTGATCCACTGGGCCTAGCTGGCACCATCAAGGATGGGGTTTACATTCCAGATAGAGAAAAGCTAGAGAGATTGAAATTGGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCTATGCTGACTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGCGCTCTTGGCTTGTAA 765 0.5098 MAAATSGAVLSSFLCGGKSSQALLATAIGGKVGAAVSPKRVIVAAAAAPKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWYEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGDQGYPGGKFFDPLGLAGTIKDGVYIPDREKLERLKLAEIKHARIAMLAMLTFYFEAGQGKTPLGALGL. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05150 254 Pfam Chlorophyll A-B binding protein 66 242 IPR022796 -
Seca6g05150 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 252 IPR001344 GO:0009765|GO:0016020
Seca6g05150 254 FunFam Chlorophyll a-b binding protein, chloroplastic 66 253 - -
Seca6g05150 254 SUPERFAMILY Chlorophyll a-b binding protein 61 254 - -
Seca6g05150 254 Gene3D Chlorophyll a/b binding protein domain 66 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05150 Seca-Chr6 118601554 118603200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05150 1 254 Chloroplast and Mitochondria Gene Families AT1G15820 80.620 2.05e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05150 K08917 - gmx:100783223 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05150 6 118601554 118603200 Seca6g05150 6 118601554 118603200 ECH
Seca12g05221 12 140945444 140946814 Seca6g05150 6 118601554 118603200 PCT