Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05147 ATGTTGGAGAAATGTGTCTGTGATTTCATCGAGCAGTTCAGCCCTTCACTTGTAAAATCCCATGCCATAGCTTCCAACACTACTTTGATCACTCTCAATTGCACCATGGGGTTTCCCCTTTTTGTTCTCCAACATATTACTTTTTCTGTCCTTGCTATTCTAAACACACATGTTATAGCTCAAGAAGGTCCTATAAGTCACCCTGAAGAGAAAGATGCTCTTTTTGGTCTCAAGGCCACTTTCAACCACCCTTTTCTAAATGATAACTGGACTGGCCTCCACTGCAATGCCAATGGTTCATCAAGGTGGTTCGGGGTTCAGTGTGCCAATGGTCGTGTCACAGGTATAGTTTTGGAAAGTATGGGGCTGGTTGGAGAAATCAATGAAAATGCATTTTTTGTCCTTGAAGAGTTGTCTATGCTGAGTTTCAAGAACAATTCTTTACAGGGAAATGTGATGAATTTCTCTAATAATCACCAAATGAAGTACATTGATTTGTCAGGCAATGTTTTCCATGGGCCAATATCAAAATCCCTCTTGAGTCTTAACCTCTTGGAAATGTTGTTTCTGCAAGATAATAGGCTCATAGGTTCAATACCAGAGTTTAGTCAATCAAGATTGGAGATATTTAATGTCTCAAATAACAACCTTGAGGGTCCAATCCCAATCACTCCAACTCTCCTATCAATTGACCCTGCTTCATACTCTGGAAATCCTAGATTATGTGGTCCACCTTCTCCTAATTCCTGTAACACTACTGAATCCAATTCTCCTTTCCCACTAGTACTACCCTTAAATGGCACAGACAACAGTGAAGTCCAAGATAAACCTTCAAATAAAAATAACAGTTCCAATATTTTGTTAATATTCAATGTGGGTCTTCTGCTTGCGATTATAATGCTACTGATTCTTTACTTTACAACATCCAGAAAGCTCAATAAAATAGTGAGGGGACAGATTACCACAGTTGAAGAAAAAGAGAAAGATGTGGAGATCAGTATTGAAAAGAAGGTAGAGATAGGGGAGGGGACAACAATGATGACAGTAGAAGAGAGAAAGGAACTCATATTCTTTAATAATAAGCCAAAATTTCAAATGAGTGAACTTCTTAGAGCCTCTGCTGAGGCACTAGGTCATGGAATCATGGGGAATAGTTATAAGGCTATGCTGAATGATGGACCTACCGTTGTTGTAAAGCGGCTAAGGGACTTGAAACCACTCACTAAGGAGGAATTTGCAAAGATAGTGCAAATGATTGCTGATCTCAAGCACCCAAATTTGTTGCCTTTGCTTGCTTACTACCATTCCAGAGATGAGAAGCTGATGCTTTATAGATATGCAGAGAATGGAAATCTTTTCTCTCGACTTCATGATGGCAGAGGTGGAAACAGGGTTCCATTCAGTTGGAGCTCAAGATTGTCAGTGGCACGAGGCGTGGCTCGAGCATTGGAGTATCTACACCTCAACAATAGGTATCATAACATTGTCCCTCATGGCAACTTGAGGTCTTCAAATGTACTCTTTGATGACAACGATACAGTTCTTGTCTCTGACTACAGCCTTGCCTCATTGATAGCACAACCAATTGCAGCTCAACATATGGTTGTTTATAAATCACCTGAATATGGGTATTCAAGAAAGGTTACAATGCAATCTGATGTTTGGAGCTATGGATCCCTTCTAATAGAACTTCTAACTGGCATAGTATCTGTTTGCTCAGCTCCACAAGGGACTAATGGCGTGGATCTATGCAACTGGGTTCACAGAGCTGTGAGAGAAGAATGGACTGCTGAGATCTTTGACAAAGAAATTTCTACCCAAAAGAGTGCACTTCCTGGTATGCTAAGGTTGCTGCAGATTGCAATGCGTTGCATTGAGAGGTTCCCAGAGAAACGTCCTGAGATGAGAGAGGTGGTGAGAGAAGTGGAGAAAATACATGCCCCCATTATCTCTGAAGATGAGGATGATGTATCCGGGGATAGGTCTCTAACTGATGATTCCTTTTCAACCAGTACTACCTCAGGGATTATTGGAGATGAAAGATAG 2046 0.4086 MLEKCVCDFIEQFSPSLVKSHAIASNTTLITLNCTMGFPLFVLQHITFSVLAILNTHVIAQEGPISHPEEKDALFGLKATFNHPFLNDNWTGLHCNANGSSRWFGVQCANGRVTGIVLESMGLVGEINENAFFVLEELSMLSFKNNSLQGNVMNFSNNHQMKYIDLSGNVFHGPISKSLLSLNLLEMLFLQDNRLIGSIPEFSQSRLEIFNVSNNNLEGPIPITPTLLSIDPASYSGNPRLCGPPSPNSCNTTESNSPFPLVLPLNGTDNSEVQDKPSNKNNSSNILLIFNVGLLLAIIMLLILYFTTSRKLNKIVRGQITTVEEKEKDVEISIEKKVEIGEGTTMMTVEERKELIFFNNKPKFQMSELLRASAEALGHGIMGNSYKAMLNDGPTVVVKRLRDLKPLTKEEFAKIVQMIADLKHPNLLPLLAYYHSRDEKLMLYRYAENGNLFSRLHDGRGGNRVPFSWSSRLSVARGVARALEYLHLNNRYHNIVPHGNLRSSNVLFDDNDTVLVSDYSLASLIAQPIAAQHMVVYKSPEYGYSRKVTMQSDVWSYGSLLIELLTGIVSVCSAPQGTNGVDLCNWVHRAVREEWTAEIFDKEISTQKSALPGMLRLLQIAMRCIERFPEKRPEMREVVREVEKIHAPIISEDEDDVSGDRSLTDDSFSTSTTSGIIGDER. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05147 681 Gene3D Transferase(Phosphotransferase) domain 1 447 663 - -
Seca6g05147 681 Pfam Protein tyrosine and serine/threonine kinase 375 641 IPR001245 GO:0004672|GO:0006468
Seca6g05147 681 SUPERFAMILY Protein kinase-like (PK-like) 375 646 IPR011009 -
Seca6g05147 681 MobiDBLite consensus disorder prediction 650 681 - -
Seca6g05147 681 Gene3D Phosphorylase Kinase; domain 1 339 446 - -
Seca6g05147 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 50 646 IPR046959 -
Seca6g05147 681 MobiDBLite consensus disorder prediction 663 681 - -
Seca6g05147 681 ProSiteProfiles Protein kinase domain profile. 371 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05147 681 SMART serkin_6 371 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05147 681 Gene3D Ribonuclease Inhibitor 158 253 IPR032675 -
Seca6g05147 681 Gene3D Ribonuclease Inhibitor 65 157 IPR032675 -
Seca6g05147 681 SUPERFAMILY L domain-like 71 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05147 Seca-Chr6 118578769 118581816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05147 46 681 Receptor kinase-like Gene Family AT4G31250 32.102 1.09e-95 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca6g05147 PK_Tyr_Ser-Thr 1.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05147 - - pcin:129284917 780.785