Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05143 ATGTCGTCTTCTTCAATTTCAATTCCGATTCCGATTCCAATTGCAAGGGATTCTGTGACTGTGAAGCAGATGCAGATACAGATGACGCTTTTCAAACCTCTGACTCTGAAGTTGAACCAGCACAGTCGCCGCCTCAACTATTGCACCTCTATTCGGTGCTCAGCTGCTGCTTCTTCCGCAGGTGGTGGTAGTGGGGACGACGATACTATTGTTCTTCATGTTGGGGGAATGATGTGCGAGGGATGCGCAGATAATGTCAAAAGAATTCTAGAAAGTCGACCACAAGTTTCATCTGCTAGTGTAAACCTAACATCCGAGATAGCAATAGTTTCCCCCGTATTTGAAGAAAAAACTGCACCAAATTGGCAAAAGCGATTGGGGAAGGCACTTGCAGAGCATTTAACTAGTTGTGGTTTCAGTTCTAACCTTCGAGGTCAGGAGGATAGCGGCTAA 453 0.457 MSSSSISIPIPIPIARDSVTVKQMQIQMTLFKPLTLKLNQHSRRLNYCTSIRCSAAASSAGGGSGDDDTIVLHVGGMMCEGCADNVKRILESRPQVSSASVNLTSEIAIVSPVFEEKTAPNWQKRLGKALAEHLTSCGFSSNLRGQEDSG. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05143 150 ProSitePatterns Heavy-metal-associated domain. 74 103 IPR017969 GO:0046872
Seca6g05143 150 CDD HMA 71 139 IPR006121 GO:0046872
Seca6g05143 150 SUPERFAMILY HMA, heavy metal-associated domain 68 112 IPR036163 GO:0046872
Seca6g05143 150 FunFam Copper-transporting ATPase PAA1, chloroplastic 68 143 - -
Seca6g05143 150 Gene3D - 68 146 - -
Seca6g05143 150 ProSiteProfiles Heavy-metal-associated domain profile. 68 142 IPR006121 GO:0046872
Seca6g05143 150 Pfam Heavy-metal-associated domain 72 139 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05143 Seca-Chr6 118555757 118558489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05143 68 144 Primary Pumps ATPases AT4G33520 64.935 7.32e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05143 K17686 - gmx:100527143 139.813