Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05142 ATGGCGGAGCGTCCTTCTTCTTACGGATTGGGTCCTCGATTAGATATTCAGCAATTACAATATGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATATTAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAAGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCACTACCTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAATGCTGATAGTGATGAGGCCATATCAGATTCCCAAAAGGTCAACTCTCCGTCATCTGGCCTTCCCACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCGTGAGCCCAACGACCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGGTGATCACGGACAGTCATCATTTTCTGGAACGGATTATATCCCACAATTTGATGGGGATAAATTTACGGGAAATGATAGCACTTGTTTCAATGGCCTGAAAGCACATGGCATGGCATCTTGGGACAGTGTCTTGCAACATGCTGCCGAGTTGCACACTGATCCATCTCTTGTGTCATTTCCTTCTATCCCATCTGGTTCAATGGGAAACATGCTTGACCAAGAACATAACATTTTGGGTGACCTTTTAATGAGCAAAAGTGGCCTCACTGATGGAGCAGGGACCTCTCAGTCTCTACAATCACATTGGCAGATTCCTTTTGAAGGAAATGCAGGACACATGCCGACCTTAACCCAATCATTGAGTTTGGATTTTGGATCTGATTTTGACACTAGTTTACTTGGGAATGAAGCTCATAATGGAAGTTCTGAAGTTTCTCCTGTCCTGTTTAGTTTTCATGGTGAGCCAAAAGACCAGCTTGTGCAGCAAAACTATCCTGAACAGCATGTAGATGAACAATTACAACATGTACTAAAGCCCAATTCTGCAAATAAAGTTCCTGGTGAAGAAACTATCAACTATCCCTTAACTATGAGACGTACATTATTGGATAGTGAGGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTTGCAGAGGTGGATGATTTGAATTTGCAGTCCTCACCTGGCATTTCCTGGAGTACAGATGAATGTGGGCATGTGATAGATGATAGCTCATTAAGCCCATCTCTCTCACAGGACCAACTGTTTAGCATAAATGATTTCTCACCTAAATGGGTTTGTGCTGAGTCAGAAACTGAGGTGTTGATCATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGATTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCAAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTAGAAATGTAGATTTTGCAGATTTTTTCAACAGTTCAACCGATATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAATGCCAGTGCACCCTTCTGAACAAACCTTTGAGGGTGATATGGAGAAAAGAAAAAAAATTTTGAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCTGACCATCGAGACAGATATATCACAACACAAGATGAAGGAACATCTGTTTCATACGCAGGTTAAAGAAAAGCTGTACTCATGGCTTCTTCATAAAGTAACTGAGAGTGGCAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGTGCGCTACATTTGGTAGCTGTTCTTGGTTATGATTGGGCCATAAGCCCAATTTTAATTTCTGGAGTCAATATTAACTTCCGTGACGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCCGTCCTTGTCTCCATGGGTGCAGATTGTGGGGCATTGACGGACCCATCTCCAGCATTTCCTTCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCAACGGGCACAAAGGAATCTCTGGTTTTCTTGCCGAGTCTTCATTAACTAGCCACCTTGAATCTCTCACAATGGATGATCAACATAAAGGTGGCCGGCAAGAAATTTCGGGAATGAAGGTGGTGCAGACAGTCTCAGAACGAAGTGCAACACCTGTGCTCTATAGTGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTCTAGCCTCTAAGGCATGCAAATCTGGACAAGGAGATGGTTTAGTCAATGCTGCTGCCATACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAATCATCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTCTACGCGGGTTTCGACAAGATGCCCTTAATAAAGTACCCGTCCAACAAAATGATTCACAGAAAGAGGATGATTATGATTATCTTAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGTTTACTAAATGTTGTTGAAGACTTCCGTCAAACGAAGGCTTGTGATATGAGTTTGATCAATTCTGAAGAGACAGTAGATGGTGTGGAGGATTTGATTGATATTGATATGCTCTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3138 0.4232 MAERPSSYGLGPRLDIQQLQYEAQHRWLRPAEICEILRNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKSNIGGNADSDEAISDSQKVNSPSSGLPTSYSSVPSLSTDSVSPTTSLTSLREDADSGDHGQSSFSGTDYIPQFDGDKFTGNDSTCFNGLKAHGMASWDSVLQHAAELHTDPSLVSFPSIPSGSMGNMLDQEHNILGDLLMSKSGLTDGAGTSQSLQSHWQIPFEGNAGHMPTLTQSLSLDFGSDFDTSLLGNEAHNGSSEVSPVLFSFHGEPKDQLVQQNYPEQHVDEQLQHVLKPNSANKVPGEETINYPLTMRRTLLDSEESLKKVDSFSRWITKELAEVDDLNLQSSPGISWSTDECGHVIDDSSLSPSLSQDQLFSINDFSPKWVCAESETEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEILANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSRNVDFADFFNSSTDMLLHLRLEEFLSLMPVHPSEQTFEGDMEKRKKILKLISLREEEEYSSKEELTIETDISQHKMKEHLFHTQVKEKLYSWLLHKVTESGKGPNVLDKDGQGALHLVAVLGYDWAISPILISGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQHKGGRQEISGMKVVQTVSERSATPVLYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDEFGLSDQRALSLLASKACKSGQGDGLVNAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALNKVPVQQNDSQKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACDMSLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD. 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05142 1045 Pfam IPT/TIG domain 461 539 IPR002909 -
Seca6g05142 1045 ProSiteProfiles IQ motif profile. 892 916 IPR000048 GO:0005515
Seca6g05142 1045 Pfam IQ calmodulin-binding motif 894 913 IPR000048 GO:0005515
Seca6g05142 1045 Pfam IQ calmodulin-binding motif 871 889 IPR000048 GO:0005515
Seca6g05142 1045 FunFam Calmodulin-binding transcription activator 2 868 916 - -
Seca6g05142 1045 MobiDBLite consensus disorder prediction 145 191 - -
Seca6g05142 1045 MobiDBLite consensus disorder prediction 145 208 - -
Seca6g05142 1045 FunFam Calmodulin-binding transcription activator 2 454 550 - -
Seca6g05142 1045 SMART iq_5 891 913 IPR000048 GO:0005515
Seca6g05142 1045 SMART iq_5 868 890 IPR000048 GO:0005515
Seca6g05142 1045 ProSiteProfiles Ankyrin repeat region circular profile. 694 720 - -
Seca6g05142 1045 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Seca6g05142 1045 ProSiteProfiles Ankyrin repeat profile. 694 726 IPR002110 GO:0005515
Seca6g05142 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 919 IPR027417 -
Seca6g05142 1045 Pfam Ankyrin repeats (3 copies) 641 722 IPR002110 GO:0005515
Seca6g05142 1045 SMART ANK_2a 694 723 IPR002110 GO:0005515
Seca6g05142 1045 SMART ANK_2a 733 762 IPR002110 GO:0005515
Seca6g05142 1045 Gene3D - 620 764 IPR036770 -
Seca6g05142 1045 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1007 - -
Seca6g05142 1045 Gene3D - 869 916 - -
Seca6g05142 1045 Gene3D Immunoglobulins 454 549 IPR013783 -
Seca6g05142 1045 SUPERFAMILY E set domains 461 547 IPR014756 -
Seca6g05142 1045 SUPERFAMILY Ankyrin repeat 645 755 IPR036770 -
Seca6g05142 1045 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Seca6g05142 1045 SMART CG_1_2 19 137 IPR005559 GO:0003677
Seca6g05142 1045 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05142 Seca-Chr6 118535482 118544644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05142 1 1026 CAMTA Transcription Factor Family AT5G64220 53.408 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca6g05142 CG-1 4.8e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05142 K21596 - gmx:100818124 1654.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05197 12 140549540 140559902 Seca6g05142 6 118535482 118544644 PCT