Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05141 ATGATAGACGGAAAGGGTGAGGTGGGGCTGAGCTATATGGATAGTCTCTGTTGCTTCAACTCTGTCAATCAGGTGGGTGGAGGACGTTCTTCATGTAGCTCTGGCAAGGGCAAGAGCCATCAGTGCCCAGTTAAGTATGGATTTAGCCTAGTTAAAGGGAGAGCAAACCACCCAATGGAGGACTATCACGTAGCAAAAATTACCCAGTTCAGAGGGCAAGAGTTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCGGCCTATTTACAAAAGCATCTCTTCTCTAATATCTTGAAGGAAGAGGACTTCTGGACTGATCCAAACAGTTCCATCATTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTGCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACTGCCATTCTTATAAATAATCAGAAGTTATGGGTAGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGGGAGGGGTGGCCATACAGATGACTATTGATCATGAGCCCAATACTGAAAGGGGCATCATTGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGTAATAAACTTAATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGGGCATTTGGAGACAAAAATCTCAAGTCACACTTGAGATCTGATCCTGACGTACAGGATGAAGAGATTGGCCCAGATACTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAACCAAGAGGCAGTTGATATTGCAAGAAAGATTAAAGACCCACAAAAGGCAGCAAAACAACTAGTTGCAGAGGCATTGAACAGAGAGAGTAAGGATGATATTTCTTGCATTGTAGTTCGTTTCAAGGGATGA 894 0.4418 MIDGKGEVGLSYMDSLCCFNSVNQVGGGRSSCSSGKGKSHQCPVKYGFSLVKGRANHPMEDYHVAKITQFRGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWTDPNSSIIKAYETTDQAILSHSADLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAIQMTIDHEPNTERGIIENKGGFVSNMPGNKLNVARVNGQLAVSRAFGDKNLKSHLRSDPDVQDEEIGPDTELLILASDGLWKVMANQEAVDIARKIKDPQKAAKQLVAEALNRESKDDISCIVVRFKG. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05141 297 SMART PP2C_4 41 293 IPR001932 -
Seca6g05141 297 Pfam Protein phosphatase 2C 54 288 IPR001932 -
Seca6g05141 297 CDD PP2Cc 44 295 IPR001932 -
Seca6g05141 297 FunFam Probable protein phosphatase 2C 39 36 296 - -
Seca6g05141 297 SUPERFAMILY PP2C-like 40 296 IPR036457 -
Seca6g05141 297 ProSiteProfiles PPM-type phosphatase domain profile. 45 295 IPR001932 -
Seca6g05141 297 SMART PP2C_SIG_2 56 295 IPR001932 -
Seca6g05141 297 PANTHER PROTEIN PHOSPHATASE 39 295 IPR015655 GO:0004722|GO:0006470
Seca6g05141 297 Gene3D - 29 297 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05141 Seca-Chr6 118528394 118533376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05141 13 296 PP2C-type Phosphatase Gene Family AT1G22280 68.621 9.91e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05141 K17506 - gmx:100787659 490.345