Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05133 ATGGGGAGCGAGAAGAAGCATGAAGATTCAGCGGTGAAGATGGAGTGGTTGTCTTGCATTGACTCAACCACTCTCTCTCACTCAGAGCTCCTTTCTCTTTCTCTCTCCTCTCTCCCCGCCTTTGACCTAACCTCCACCCGCGACCTCGTTACTCCCAAAATCGACCCCTCCCTCTTCAACGAGAGCACTGGCTCCCACCGCCAGACTTACTCCCGACCCCGCCGCCGACGCCGCGTCGCCGCCCTCCTTCCCACCCCTCCCCTCCCCTCCGACCACCGCGTCATCATCGATTACCTCAAGCAATTAATCAGGGAAGACCCTAAGTTCGATCAGGTGGAGCTGCTGCCCCCATCTTCCGTTCCCGAGCCGAGACCAGAACCGAGAACGGAGCCACCGAATGTGGTGAGATTTAACGGGAAGAGGAAGAGAGGGAGGAAGCCCAAAGTGAAGGTGCATTTGGAGGAGTGCTACAGAGGAATGGAGATTGTGAACAAGAATGGCGTCGCCATCGATCTATCCGCCTTGGCCAATGCCGAGGACCCCTTCGCCGAGGAGCTGGCGAGACGGACGGAGGGGCTGCGCGGCGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGGTGGGCCAATGGGGTAGCAGGAGGAAGAAGAGGAGGATTGTTGGCGCTGCTGATTTCGGTGATGTTTTGCCTCTCGGTTGGAAGCTCCTCCTTGGTTTGAAGAGAAAGGATGGTCGTGCATGGATCTATTGCCGCAGATACATCAGTTTCCTTGATGCTGAGATGATTTCTCTTTCACTACTGTACTGTTCCCTTTCTTGGGCTTATGTGTTCTCTTATTTGACATTCTCCAGTCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTCTCTTCCTATTTGCAGTCTCTTTTTGGTCATAGTGAAGCACAACTACAAATCGGTCGTAGGAGTGAAAATATACTGCAGGAGCAGAGAGTGACTGCTGAAAATTCTGCAGGTGTTACCCGTGAGGACCAAGATCAACGGCAGATTGTTGCGACTAACTCAGATGTGCCGGGTTTATCTGTTTCTAATGAACGAGTGAAGGAAGTGGCCTTATTGGGGATTGAAAATCTTGCAGATGTGCAAATACATGACCTGTTTGAATGTCATAAATGCAATATGACCTTTGATGAGAAGGATGCATACTTGCAGCACCTGTTGTCCTTTCACCAGAGGACAACCAGACGGTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAATTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGCTACAATGGTCATGTTGGGATCCATGTTAGGAATTATGTGAGGAGAGTTGAAGATTCACCAGGTCAAGGAAATGTCCGAAGGACAGACAACTCTCCAGTCAGAGAGGAGATGCCTTCAAGGATCTCTAAGATGGATGCACTCATTGAAATTGCTCATAATTCTATTATGGAGGATTCTGGCACAGAACCCCATTTTTCAGCTAAACTGAATATGATTCATGCTTCAGAAATTGATGTTGATGACCTAGATCAAGACATGAACTTTGAGTCTCCAATCAGTGAACAGCAACACAATTCACATCAGCAAGATTGTCAACATTTACTTGTGGATGAAGAAGTAGAGGAAAATGATGATGATAACCGAGTTATTGATGCAAAGGTGGTCACTTTTCTAGGTAACATGGGTTTGTTATCTGTAAATAAGCAAAATGTTAATGCATTTGATACTTCTAAGGGAAAAGATGATGTGGCATTGACTGCTGAGAGGTTTGATCAGTCTGGAATTTATTTGGAAGGAGTTTCTCAAAGCCCTTTACTTCCCTTATCTGGCAATCAAATAATACCTGAATCTAAGAAGAATGAAAATTGTGGTTTAACTAACACTGAGGAGCAATTTAAATTTGATGGAGACAATAGTAATAAGAGTGAGTTGAATATTGGTTTAGAGGGCAGCAAGGATGTGCCTGTTAACGCCAATGTTCAAGAGTCAGTAATGCCGGCTTCGAAAGAAAATGTGGTCCATTCTAGGGTTTCTTACCCCTCTATATCCACAGAACAATCTTTGGATCGTTTTCCTGCATTCAGCTCAGATAAGGGAGGAAAACAAATATGCAATGCTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTGGATGAAATAGGTACTCTCGAGTATGATTTTGCAAGTGCTCAAGATTCTCTTCCTCTGCCTGATGCGCCAACTGAGTTGGCAAATAATACAGTGGTGGAAGGGACATATGCATCCTCAGTTCAGTTTGAATCACAGGAAGTTATGTTAAATGCGGATGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAATCATGATGCTGTTAATTCTGAAATGCAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGCAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGATAGTGGATCACCAAATGCTGACCATCTTTAG 2541 0.4545 MGSEKKHEDSAVKMEWLSCIDSTTLSHSELLSLSLSSLPAFDLTSTRDLVTPKIDPSLFNESTGSHRQTYSRPRRRRRVAALLPTPPLPSDHRVIIDYLKQLIREDPKFDQVELLPPSSVPEPRPEPRTEPPNVVRFNGKRKRGRKPKVKVHLEECYRGMEIVNKNGVAIDLSALANAEDPFAEELARRTEGLRGEEELLGFLRDLVGQWGSRRKKRRIVGAADFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISFLDAEMISLSLLYCSLSWAYVFSYLTFSSPSGQQFVSCKEVSSYLQSLFGHSEAQLQIGRRSENILQEQRVTAENSAGVTREDQDQRQIVATNSDVPGLSVSNERVKEVALLGIENLADVQIHDLFECHKCNMTFDEKDAYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQGNVRRTDNSPVREEMPSRISKMDALIEIAHNSIMEDSGTEPHFSAKLNMIHASEIDVDDLDQDMNFESPISEQQHNSHQQDCQHLLVDEEVEENDDDNRVIDAKVVTFLGNMGLLSVNKQNVNAFDTSKGKDDVALTAERFDQSGIYLEGVSQSPLLPLSGNQIIPESKKNENCGLTNTEEQFKFDGDNSNKSELNIGLEGSKDVPVNANVQESVMPASKENVVHSRVSYPSISTEQSLDRFPAFSSDKGGKQICNADHEHDNVKGFQELRLDEIGTLEYDFASAQDSLPLPDAPTELANNTVVEGTYASSVQFESQEVMLNADGRNQLTTVCVWCGIEFNHDAVNSEMQPDSVGFMCPACKAKISGQINVLDSGSPNADHL. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05133 846 ProSitePatterns Zinc finger C2H2 type domain signature. 430 450 IPR013087 -
Seca6g05133 846 ProSitePatterns Zinc finger C2H2 type domain signature. 383 404 IPR013087 -
Seca6g05133 846 ProSiteProfiles Zinc finger C2H2 type domain profile. 381 409 IPR013087 -
Seca6g05133 846 MobiDBLite consensus disorder prediction 461 480 - -
Seca6g05133 846 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 5 656 IPR037472 -
Seca6g05133 846 MobiDBLite consensus disorder prediction 111 145 - -
Seca6g05133 846 MobiDBLite consensus disorder prediction 53 75 - -
Seca6g05133 846 ProSiteProfiles Zinc finger C2H2 type domain profile. 428 455 IPR013087 -
Seca6g05133 846 Gene3D Classic Zinc Finger 369 455 - -
Seca6g05133 846 SMART c2h2final6 428 450 IPR013087 -
Seca6g05133 846 SMART c2h2final6 381 404 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05133 Seca-Chr6 118475002 118479947 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g05133 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05133 - - gmx:100526917 1004.97