Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05123 ATGGAAAACGACGATGTCGACATGCAGGCAGCAGAGACCAACGAAGTAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCAGTGCAAGATCCTGCATCTGCTTCTGCAAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAGGTGCAGCAGCATTTTCAGTCATGTGGAACAGTAAACAGAGTGACCATTCGGACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGACAGAGGCTGTTCAAGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTGAAGGTAACAGCTAAGAGGACCAACATACCAGGGATGAAGCAGTATCGTCCCCGCCGAGCAGCCAATCCTTACATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCTTATTCACCATATGGATATGGGTATATGAAAGTTCCAAGGTTCAGAATGCCAACGCGCTACAGCCCCTACTATTGA 600 0.4783 MENDDVDMQAAETNEVELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPASASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRAANPYMGFRGRTPYAPPFAYSPYGYGYMKVPRFRMPTRYSPYY. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05123 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Seca6g05123 199 SUPERFAMILY RNA-binding domain, RBD 55 168 IPR035979 GO:0003676
Seca6g05123 199 MobiDBLite consensus disorder prediction 43 64 - -
Seca6g05123 199 SMART rrm1_1 69 140 IPR000504 GO:0003723
Seca6g05123 199 CDD RRM_II_PABPs 69 140 - -
Seca6g05123 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Seca6g05123 199 Gene3D - 3 141 IPR012677 -
Seca6g05123 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 155 - -
Seca6g05123 199 Coils Coil 8 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05123 Seca-Chr6 118409596 118414743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05123 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 5.25e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05123 K14396 - gmx:100791351 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05123 6 118409596 118414743 Seca6g05123 6 118409596 118414743 PCT