Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05120 ATGGAGATGGAGGATCCAGCCAGCTGGAAGAAGCCAATGGCAAGCTATCTCGTACGCTACCATTCCGATCAGCTCCGCTCCATCGCTTCTTCTCCCGATTCCAACCTTCATTTCCCTCTTTACGTCGATTTCGCAGAGTTGATGGAGGATGATCCTCGCACTGCTCGTCTCCTCTTTGCCCAACCCAACACCTACTTGCAAGTGTTCGATGATGCTGCTCTTTGGGCTCATAAAATCATATTGGAAGATATGGCGGATGACAAGAAAGGGATTGAGAAGAAATTCATTCATGTTCGCATTAACGTCAGTGGCTCGCCACTTGAATGCCCTGAGACCTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATCCTTCTCACTCTCAAAGGGATAGTGATCAGGTCCGGTGCAATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCAGAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGAAGTCTAAACCCTGTGGAGGCACAAAATTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTAATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGATGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATTAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTCTGGGTTCACTTCAAAGATGCACCTTTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCACAAATATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCCGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAACAGCAGACAATAAGTGTTGCCAAGGCCGGTCTTGTAACAACACTCAGTACTAGAACAACAGTATTTGGGGCCACAAATCCTAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACGACACTTTCTGGTCCTTTATTAAGCAGGTTTGATATTGTTCTAGTTCTCTTAGATACAAAGAATCCTGAATGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATGTGAAAGAAACTTTCAGACCAGTCCTTTCGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGGTTTGACCTAG 1719 0.4334 MEMEDPASWKKPMASYLVRYHSDQLRSIASSPDSNLHFPLYVDFAELMEDDPRTARLLFAQPNTYLQVFDDAALWAHKIILEDMADDKKGIEKKFIHVRINVSGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCKNSFTVYPEVEARNSISLPSICPIQKSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDDIVMKFKQFWVHFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLANIWPLSTLKRYIHYVKETFRPVLSREAEIVISSYYQLQRKSATHNAGLT. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05120 572 ProSiteProfiles MCM family domain profile. 304 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 403 417 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 345 360 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 431 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 SUPERFAMILY Nucleic acid-binding proteins 37 254 IPR012340 -
Seca6g05120 572 SMART AAA_5 346 495 IPR003593 GO:0016887
Seca6g05120 572 Gene3D - 119 247 IPR012340 -
Seca6g05120 572 Gene3D - 279 572 IPR027417 -
Seca6g05120 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 559 IPR027417 -
Seca6g05120 572 Pfam MCM OB domain 119 247 IPR033762 -
Seca6g05120 572 SMART mcm 112 572 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 Pfam MCM P-loop domain 306 509 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca6g05120 572 Gene3D - 143 199 - -
Seca6g05120 572 FunFam DNA helicase MCM9 isoform X1 280 572 - -
Seca6g05120 572 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 39 566 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05120 Seca-Chr6 118387655 118396104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05120 3 572 Core DNA Replication Machinery Family AT2G14050 74.306 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05120 K10738 - gmx:100776255 1032.32