Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05113 ATGGGGCGGCATCACAGGAAGTTGATGTCAGAAATCTGTGAGGTGATCTGTCATGTGAAGGAGCCTGGTTCATGTTCATCAGACTGCAAAATTTGCCTCAAGATCTGCCTAACTAATCCCCAATACTATCCTTATTATTCTCCTCCACCACCACCGCCTCAACCACAAGTTCCTTCTTTTTACTCAGATAAAGATGAATATCAAGGAAACAACCACAAAATCTCCACCTATTTGATCCTAGCTCTTGCTCTTCTAGCTGCTGCTTTCTTTGTTGTTTGCTGCCGTGCCATCTATACCAGGCTTGGCTCAAGGAGGAGGGAATCACCAACGGAACAAACACAAGAGACCCGTGAAGATTTTCTTGATGAAGAACATGGCCCTATGGTGGACCACCCCATTTGGTATATCCGCACCCCTGGTCTCCACCAATCGATTATCAACGCCATAACAGTTTGTAAGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACAGAGTGTGTTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCTCATACCAATTGTCCCATGTGCCGGGCTCCCATTGTGACCAACCCTGCAACTGCAAGGATTCCATCTCTGGAACATACCATTACCAATCTTGTTGATTCAAGTTCTTTGGAACATACCCAGATGGAAATTTTGGAAAATAGCAGTGGAAACAGTGAAGGATTGGAAAATGGTGATTCTGATTCTGAATTGAGGAACAGGGCAGAGGAAGAAGGGCAATTGGAAGTTGAAGATGGGACTGAAACTGAAGGCTCAGCTGCAGAGGTGGTAAATATTAGGCCTAGGAGATCTGTTTCTCTTGATTCTTCTTCGGTTGCAAATATCAATCTTGCTCTTGCAACATTTGTATCAATGGAATCTAATGGTAATTCAAATAGAGTGCTGGGGGGTGTCAATGTCATTGAACCTAGTGTTTCAAAGAGGGTTACTGGAAACGAGAATTTGGCTACTACATCTTCAAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGCCCAATGAAGAGGTCATATTCCTACAATGGGAAGTACCTTCTGTCCTCCTGGTATAGCCGCAGTCAGAAGAAGCAAAATGCTATTCTGAGAAGCTTTTAA 1206 0.4287 MGRHHRKLMSEICEVICHVKEPGSCSSDCKICLKICLTNPQYYPYYSPPPPPPQPQVPSFYSDKDEYQGNNHKISTYLILALALLAAAFFVVCCRAIYTRLGSRRRESPTEQTQETREDFLDEEHGPMVDHPIWYIRTPGLHQSIINAITVCKYKKGEGLIEGTECVVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVTNPATARIPSLEHTITNLVDSSSLEHTQMEILENSSGNSEGLENGDSDSELRNRAEEEGQLEVEDGTETEGSAAEVVNIRPRRSVSLDSSSVANINLALATFVSMESNGNSNRVLGGVNVIEPSVSKRVTGNENLATTSSKGSSSFRLTRYLQGVPSPMKRSYSYNGKYLLSSWYSRSQKKQNAILRSF. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05113 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
Seca6g05113 401 Pfam Ring finger domain 165 208 IPR001841 -
Seca6g05113 401 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 67 233 IPR044675 -
Seca6g05113 401 SUPERFAMILY RING/U-box 159 218 - -
Seca6g05113 401 CDD RING-H2_EL5-like 165 208 - -
Seca6g05113 401 MobiDBLite consensus disorder prediction 244 285 - -
Seca6g05113 401 SMART ring_2 166 207 IPR001841 -
Seca6g05113 401 MobiDBLite consensus disorder prediction 257 272 - -
Seca6g05113 401 FunFam RING-H2 finger protein ATL54 141 214 - -
Seca6g05113 401 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05113 Seca-Chr6 118348427 118349632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05113 74 215 C3H Transcription Factor Family AT1G72220 52.703 1.43e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05113 - - gmx:100804758 473.781