Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g05107 | ATGGGAGTGGAGAAGCAAATCGTGAGGCCTGGCACCGGTCCCAAGCCCCTTCCTGGTCAGAATGTCACTGTTCACTGCACTGGTTTCGGGAAAAACGGTGACCTTTCTCAGAAGTTTTGGAGCACAAAGGATCCTGGCCAGAACCCTTTCACATTCAAAATTGGCCAAGGATGGGATGAAGGTGTGATTGGCATGCAAATTGGTGAAGTTGCTCGTCTCCGGTGCTCTCCTGATTATGCTTATGGTGCTGGTGGCTTTCCTGCTTGGGGAATACAGCCCAACTCTGTCTTGGAATTTGAAATCGAGGTCTTAAGTGCGCAATGA | 324 | 0.5 | MGVEKQIVRPGTGPKPLPGQNVTVHCTGFGKNGDLSQKFWSTKDPGQNPFTFKIGQGWDEGVIGMQIGEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLSAQ. | 108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g05107 | 107 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Seca6g05107 | 107 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 15 | 104 | IPR001179 | GO:0003755 | |
| Seca6g05107 | 107 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 19 | 107 | IPR001179 | GO:0003755 | |
| Seca6g05107 | 107 | FunFam | Peptidylprolyl isomerase | 1 | 107 | - | - | |
| Seca6g05107 | 107 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 2 | 106 | - | - | |
| Seca6g05107 | 107 | SUPERFAMILY | FKBP-like | 2 | 105 | - | - | |
| Seca6g05107 | 107 | Gene3D | - | 1 | 107 | IPR046357 | GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g05107 | Seca-Chr6 | 118287926 | 118289656 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g05107 | 2 | 105 | Calmodulin-binding Proteins | AT5G48570 | 37.273 | 3.75e-12 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g05107 | K01802 | - | gmx:100500283 | 216.853 |