Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05098 ATGGAGGGTGGCAACAGAGCCGAAGCAGAGCGGTGGCTCTACACCGCCAACAAACTCCTGAGCGCACGTGACCTTCACGGGGCCCGCTCCTTCGCCATCCGAGCCCGAGAATCCGACCCGAGTTTCGACGCCACTGACCTCCTCCTCGCTGTCATCGACACCCTCCTTGCCGGTGAGGCCCGGATCAGGGACCACCTCGACTACTACGCCATTCTCCAAGTCATCCGTTACACACAGAACATTGAGTACATCGCCGCTCAGTATCACCGTCTCGCCCTCCTTCTTGACCCTCACCGAAACCCCTTTGCCTTTGCCGCTCACGCCTTCACCCTCGTCCATGATGCTTGGTCCCTTCTCTCCAACCCTACCAAGAAGGCTCTTTACGATAACCAACTCAGATTGCTTACTCAACCACCCCCTCCTCAACCTCAACCTCCACCACCACCTCCTCCTCCTCCTGCTCCTGCTCCAGCTCCCGCTCCCGCTCCTCCTATTCATCACAACCAAAACCCACACCAACACAGGAAAAACCCTAGGTCCAAGGAGGCTCCCAGGGTAGTTGCTGAGGAAGAAGAGAACAGGCCGAGTCATGACAATGTCGCTGAGCCGACTCGGCCGAGTGAGACTGAGGGGAGGAGTTTCTGGACTGCGTGTCCCTACTGTTACGTCATGTACGAGTACCCTTCGGTGTACGAGGAGTGTACTCTTCGGTGCCAGAATTGCCGGAGGGGTTTCCATGCGGTGGCGGTACGGTCGCCGCCGCAGATGACTGGGGATGGTGGTTCGTTTTGCAGCTGGGGGTTTATCCCATTAGGGTTTTCTGGGAATTTTAAGGATATTAGTGGGTCTTCTTCCGAGTGGAATCCTTTTGCTCCTCTGTTTCCTTGCCCTTTGAAAGGGGGTTCTTCCAATAAAGGCTCTCGGAAGGGGCCTTGGGTTTATTATGATGATGAAGCGGCTGCGGCGTTTGTGGAGCTTTCCGACACGACGGATGACGATTCTGATGACGGCGACTGGCGGGGCGGGCCTAATAGGAAGGGGAGGAAGAGAGGGAGGAGGAAAGGGGCTTTTACTGGTGGTGGTGGTGCTTTTAGACCAGTTGGGAGGCCTAAGAGAGGGGTTCATAATGGTGCTGATCATGACAATGTGGGTAATGGTGGTGAGGCTGTGGAGGGTGCTTCTGCGCCTGGAGTGACCAATGCTGCTGCTGCAAGGCCGGAATCTAGCAAGAAAGTTGCTTTGGGTGGTTCCAGGAGGAGGGGTGCGGGGAATTTGGGGAAGTTGGATTTGAATGTGGAGTTCAGCAATGAGGTGGAAGAGCCTGCCCCTGGAGTGAGTGAAGGCAATGGGAATGGAACTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAGGGGCTTGATGAGTTCCTCAGTAGCTTACCTATTCTCAATGTTGTTGCAGATGATAAGGTTAAGGGCCATTAG 1473 0.5499 MEGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPSFDATDLLLAVIDTLLAGEARIRDHLDYYAILQVIRYTQNIEYIAAQYHRLALLLDPHRNPFAFAAHAFTLVHDAWSLLSNPTKKALYDNQLRLLTQPPPPQPQPPPPPPPPPAPAPAPAPAPPIHHNQNPHQHRKNPRSKEAPRVVAEEEENRPSHDNVAEPTRPSETEGRSFWTACPYCYVMYEYPSVYEECTLRCQNCRRGFHAVAVRSPPQMTGDGGSFCSWGFIPLGFSGNFKDISGSSSEWNPFAPLFPCPLKGGSSNKGSRKGPWVYYDDEAAAAFVELSDTTDDDSDDGDWRGGPNRKGRKRGRRKGAFTGGGGAFRPVGRPKRGVHNGADHDNVGNGGEAVEGASAPGVTNAAAARPESSKKVALGGSRRRGAGNLGKLDLNVEFSNEVEEPAPGVSEGNGNGTGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05098 490 MobiDBLite consensus disorder prediction 136 166 - -
Seca6g05098 490 MobiDBLite consensus disorder prediction 134 210 - -
Seca6g05098 490 MobiDBLite consensus disorder prediction 175 205 - -
Seca6g05098 490 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Seca6g05098 490 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca6g05098 490 Gene3D DnaJ domain 62 137 IPR036869 -
Seca6g05098 490 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Seca6g05098 490 MobiDBLite consensus disorder prediction 439 459 - -
Seca6g05098 490 Pfam DnaJ domain 67 129 IPR001623 -
Seca6g05098 490 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 384 - -
Seca6g05098 490 CDD DnaJ 67 121 IPR001623 -
Seca6g05098 490 SMART dnaj_3 66 124 IPR001623 -
Seca6g05098 490 MobiDBLite consensus disorder prediction 328 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05098 Seca-Chr6 118244557 118246029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05098 8 489 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.767 9.66e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05098 - - lja:Lj6g3v2193500.1 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05135 12 139429088 139434484 Seca6g05098 6 118244557 118246029 PCT