Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05097 ATGATGAAAGCGAAGATGGAAATAAAGAAAATAGACAACATAGGAGCTAGGCAGGTAACATTTTCAAAGAGGAAGAAAGGGCTTTTTAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATGCTGAGATTGCTCTCACAGTCTTTTCTTCTGCTGGCAAGCTCTTCGAATATGCTACCTCAAGTGTGCAGCAGGTAGTTGAAAAGTACAATCTGCATCCAAGCATTGACAGATCATTACAACACCCTGCAGAGCTGCAGCCTGACAGTGATACCTATAACTACTTCTTGATGAGCAAGGAAGTGGCAGATAGGACTCGTGAACTGAGGAAATTGAATGGGGAACAGCTGCAAGGATTAAAACCTCATGAACTACAGAAACTAGAGAAACTACTAAAAAAAGGTTTGGCCCGTGTTTCAAGAGCAAAGGATGAAATAATTGTAAAGGATGTCACAGCGCTGAAGAAAAAGAAAGTTGAACTTGTGCAAGACAACCGACGACTGAAACAGAAACAAAGTCTTGCAAACGATCCAGGGCAATCTTCCAAGTCAATCATGATTTGTAGCCCATCAAATCTTGCTGAAGATTCTGATAATTTTGATGCTTCTCTCTGCTTGGGGTTAGTTAATTTTTTACTCCGTAACAGTCATGACTCATGA 657 0.4079 MMKAKMEIKKIDNIGARQVTFSKRKKGLFKKAQELSTLCDAEIALTVFSSAGKLFEYATSSVQQVVEKYNLHPSIDRSLQHPAELQPDSDTYNYFLMSKEVADRTRELRKLNGEQLQGLKPHELQKLEKLLKKGLARVSRAKDEIIVKDVTALKKKKVELVQDNRRLKQKQSLANDPGQSSKSIMICSPSNLAEDSDNFDASLCLGLVNFLLRNSHDS. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05097 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 Pfam K-box region 97 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca6g05097 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca6g05097 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Seca6g05097 218 Coils Coil 124 144 - -
Seca6g05097 218 Coils Coil 150 170 - -
Seca6g05097 218 CDD MADS_MEF2_like 5 78 IPR033896 GO:0000977|GO:0045944
Seca6g05097 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca6g05097 218 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca6g05097 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05097 Seca-Chr6 118227003 118241031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05097 1 170 MADS-box Gene Family AT4G24540 50.588 1.33e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca6g05097 K-box 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05097 - - ahf:112786765 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05129 12 139329395 139337787 Seca6g05097 6 118227003 118241031 PCT