Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05096 ATGACGAGAAAGAAGATTGAGATAAAGAAGATCGAAAACATAAACGCGAGGCAGGTGACATTCTGTAAGAGGAGGGGAGGTCTTTTTAAGAAGGCTCAGGAGTTGTCTACTCTTTGTGATGCTGAGATTGCTCTCATAATCTTTTCACCCACCAACAAGCTCTTTCACTATACTACTTCAAGCATGCAAAGTGTAATTGAAAGGCGTAATAGGCATTCAGCGATTCAAAGATTAGACAATCCACCGATTGAGCAGCAGATTTACTCCGTGGACATGCTGCGCAAGGAAGTAGCAGATAGGACTCATGAACTGAGTCAGTTGAATGGAGAAGAGCTGCAAGGATTGACAATGCTAGAACTGCAGAAACTAGAGGAACTACTTCAAAGAGGTTTGTCCACTATTTCAAAAGTAAAGGGAGCCGAACTTACGGAAGAGAACCAAAAACTGAAACAGATACAGAGCTTTTCACAAGAACAAAGGCAATCATCATACAAGTTCATTACTTGCAGTTCATCTGATCTTCCTCTAGACTCAGCTGACACATCTCTCAAGTTGGGGTTAGTCTACACTTATCTTGTAACACATAGCATGGATGAAGAGTATGATGTAATAGTCCTGGGAACAGGCCTCAAGGAATGCATTCTTAGTGGTCTTCTCTCAGTTGATGGCCTCAAAGTGTTGCACATGGACAGAAATGACTACTATGGAGGAGAGTCTACATCTCTTAATCTCACACAGTTATGGAAGCGATTTAGGGGAGATGACAAACCGCCAGAGGAGTTGGGCTCAAGCAGGGAGTATAATGTTGATATGATTCCAAAGTTTATGATGGCCAATGGAATTTTTGTCCGTGTTCTCATCCACACAGATGTTACCAAGTATTTAAACTTTAAAGCAGTAGATGGAAGTTTTGTGTATAACAAGGGAAAGATTTATAAAGTTCCAGCATCAGACGTTGAAGCACTGAAATCACCTTTGATGGGACTATTTGAGAAGCGTCGTGCTCGAAAGTTCTTCATTTATGTCCAAGACTATGAAGAAAATGATCCAAAATCTCATGAAGGGCTAGATTTGAACCAAGTTACAGCAAGGCAGCTGATATCGAAATACGGGTTGGAAGATGATACAATTGACTTTATTGGTCATGCCTTGGCACTTCATCTTGATGATGGTTACTTGGATGAGCCAGCCAAGGACTTTGTAGAGAGAATAAAGCTTTATGCAGAATCCCTAGCACGATTTCAAGGAGGATCACCTTACATATATCCACTGTATGGACTAGGAGAATTGCCACAGGCATTTGCACGTTTGAGTGCAGTGTATGGTGGAACTTACATGCTCAACAAGCCAGAATGCAAGGTAGAGTTTGATGGTGATGGGAGAGCCATTGGCGTGACCTCAGAAGGAGAAACAGCCAAATGCAAGAAAGTTGTGTGTGATCCATCATATCTGCCTGATAAGGTCCGCAATATTGGAAAAGTTGCACGTGCAATATGCATTATGAGCCATCCTATTCCAGACACCAATGATTCTCACTCAGCACAAGTAATTCTGCCGCAGAAGCAACTTGGTCGTAAATCAGATATGTATCTCTTCTGCTGCTCTTATTCTCACAATGTAGCAGCAAAAGGAAAATATATTGCTTTTGTTACAACAGAAGCAGAGACTGACCAACCTGAGGTGGAATTGAAACCCGGTATTGACCTTCTTGGACCAGTAGATGAGATCTTCTATGACACATATGACAGATTTGTACCCTCAAATGATCATGAAGTTGATGGTTGTTTCATCTCAGGAAGCTACGATGCTACCACACACTTTGAGACCTCTGTAAAAGATGTGCTTGAGATGTACAGTAAGATCACTGGAAAGACTCTTGATCTTTCGGTGGACCTAAGTGCTGCAAGTGCTGCAGCTGAAGAATGA 1926 0.418 MTRKKIEIKKIENINARQVTFCKRRGGLFKKAQELSTLCDAEIALIIFSPTNKLFHYTTSSMQSVIERRNRHSAIQRLDNPPIEQQIYSVDMLRKEVADRTHELSQLNGEELQGLTMLELQKLEELLQRGLSTISKVKGAELTEENQKLKQIQSFSQEQRQSSYKFITCSSSDLPLDSADTSLKLGLVYTYLVTHSMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLTQLWKRFRGDDKPPEELGSSREYNVDMIPKFMMANGIFVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPASDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGLDLNQVTARQLISKYGLEDDTIDFIGHALALHLDDGYLDEPAKDFVERIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDGDGRAIGVTSEGETAKCKKVVCDPSYLPDKVRNIGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYSHNVAAKGKYIAFVTTEAETDQPEVELKPGIDLLGPVDEIFYDTYDRFVPSNDHEVDGCFISGSYDATTHFETSVKDVLEMYSKITGKTLDLSVDLSAASAAAEE. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05096 641 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 220 237 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 265 282 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 331 346 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 408 425 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 202 220 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 282 298 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PRINTS Rab GDI/REP protein family signature 426 447 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 PANTHER RAB GDP-DISSOCIATION INHIBITOR 197 634 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca6g05096 641 SUPERFAMILY FAD/NAD(P)-binding domain 197 550 IPR036188 -
Seca6g05096 641 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 314 419 - -
Seca6g05096 641 FunFam Rab GDP dissociation inhibitor 195 264 - -
Seca6g05096 641 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Seca6g05096 641 SUPERFAMILY FAD/NAD(P)-binding domain 586 629 IPR036188 -
Seca6g05096 641 PRINTS Rab GDI protein signature 212 224 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 321 336 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 378 392 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 476 490 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 271 284 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 577 596 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 519 535 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 544 562 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 PRINTS Rab GDI protein signature 598 618 IPR000806 GO:0005093|GO:0015031
Seca6g05096 641 Gene3D - 198 626 IPR036188 -
Seca6g05096 641 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g05096 641 Pfam GDP dissociation inhibitor 197 629 IPR018203 GO:0005092|GO:0007264
Seca6g05096 641 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 253 583 - -
Seca6g05096 641 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 314 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05096 Seca-Chr6 118194249 118210706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05096 1 189 MADS-box Gene Family AT2G22540 43.277 1.55e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca6g05096 GDI 1.2e-224 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05096 K17255 - gmx:100792036 832.787