Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05082 ATGGCAAACGCTCATTTATCAACACAACGTAATCCGCCGAGGGTTCCAAATCTCATCGGTGGCAAATTTGTCGAGTCAAAATCATTGTCTTTCATTGATGTTATCAACCCTGCAACGCAACAAGTTGTTTCACAACTTCCTTTGACTACAGATGAAGAGTTTAAAGCTGCAGTAGCTGCAGCAAAGAAGGCATTTCCAGCATGGCGTAACACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGGGATATGGATAAACTTGCCCTGAATGTGACCACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTCCGAGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAGATGGGGGAGTATGCTTCCAATGTATCACGTGGAATTGATACCTTCAGCATTAGAGAACCACTTGGTGTTTGTGCCGGTATTTGTCCGTTCAACTTTCCTGTTATGATTCCCTTGTGGATGTTCCCAATTGCAGTTACCTGTGGCAATACCTTTATTCTAAAACCATCAGAGAAAGATCCAGGTGCTTCTATAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCAGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATGTTGTAAATGCTATTTGTGATCATGACGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAATCTAACATGGGGGCCAAGAATCATGCTGTTGTCATGCCTGATGCAAGTGCTGATGATACTATAAATGCTTTAGTTGCTGCGGGTTTTGGTGCTGCCGGACAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAATTGTGGGAAAGTAAACTTGTGGAGCGTGCCAAATCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCTGACCTTGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGGTTTGACAGTGGTGCTAGACTAGTGCTTGATGGAAGAAGTATAGTGGTCCCCAAATATGAATCTGGTAATTTTATTGGTCCAACCATCTTAGCAGATGTCACTGCCGATATGGAATGCTATAAGGAGGAGATTTTTGGCCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACGGAAACAAGTATTTGTTAACAGCTACTCCGTGTTATTTACTTTTGTTAAACTGCCATTTATCTCTTACCCTGGCCTTTCCAACAGGTATGGAAATGGTGCTACTATATTTACTAAATCCGGTGTGGCTGCAAGGAAATTTCAGACAGAGATTGAGGCTGGGCAGGTGGGCATCAACGTTCCCATTCCTGTTCCTTTACCCTTTTTCTCTTTCACCGGCAACAAGGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAGATAA 1530 0.4288 MANAHLSTQRNPPRVPNLIGGKFVESKSLSFIDVINPATQQVVSQLPLTTDEEFKAAVAAAKKAFPAWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYASNVSRGIDTFSIREPLGVCAGICPFNFPVMIPLWMFPIAVTCGNTFILKPSEKDPGASIMLAELAMEAGLPEGVLNIVHGTHDVVNAICDHDDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAVVMPDASADDTINALVAAGFGAAGQRCMALSTVVFVGGSKLWESKLVERAKSLKVNAGTEPDADLGPVISKQAKERIHKLIQSGFDSGARLVLDGRSIVVPKYESGNFIGPTILADVTADMECYKEEIFGPVLLLMEADSLEEAINIINGNKYLLTATPCYLLLLNCHLSLTLAFPTGMEMVLLYLLNPVWLQGNFRQRLRLGRWASTFPFLFLYPFSLSPATRHHLQAISISMARQGLTFIHR. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05082 509 Pfam Aldehyde dehydrogenase family 23 422 IPR015590 GO:0016491
Seca6g05082 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Seca6g05082 509 CDD ALDH_F6_MMSDH 15 418 IPR010061 GO:0004491
Seca6g05082 509 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 17 418 IPR010061 GO:0004491
Seca6g05082 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 422 IPR016163 GO:0016620
Seca6g05082 509 SUPERFAMILY ALDH-like 12 423 IPR016161 GO:0016491
Seca6g05082 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 34 259 IPR016162 GO:0016491
Seca6g05082 509 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 260 424 - -
Seca6g05082 509 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 419 IPR010061 GO:0004491
Seca6g05082 509 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 19 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05082 Seca-Chr6 118068515 118074299 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05082 7 418 Aldehyde Dehydrogenase Gene Family AT2G14170 81.840 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05082 K00140 - gmx:100783569 746.888