Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05078 ATGGATGTTCAAAGCAGCTCAGAATTGAATGAAACTACACATATGCTTCCACCTCCCCCTGGCACATTTGTAGATCGTGAAGAACTCATCCAGTATGTTGGAGACTTTTCTGTGTCCCAAGGATATGTAGTCACTATCAAGCAATCCAAGAGGGACAAAGTAGTTGTACTTGGTTGTGACAGAGGGGGTGTTTATCGCAATCGGCGAAAACCTGTTGAGGATTCCTCAGCTGAACATAGCCGCAAAAGAAAAACTGGTTCACGTCTAACAAATTGTCCTTTTGAAGCTGTGGGCAAGAAGGAAGATGGCTTGTGGGTACTCACCATAAAAAATGGAACACATAATCATGAGCCATTAAGGGACATTTCAGAACATCCTTCTGCTCGTCGCTTCACGGAGAGCGAAGTTTTGCTCATTAAGGAAATGACAGAAGCTGGGTTTAAACCTCGACAAATTCTAAAGAGACTGAGACAAAGCAATCCAGAACTTTTATCAACCCCAAAGCATGTTTATAATGTTAAAGCTAAGCTTAGACAAGGAAACATGAATGTTAGGAATTTCAAGTCACTGAGACCTGAGAAATCTGCCGTAAGAAATAATTATCTTGCAGTAATTGAACCATCATGGAGGCAGCGCAACCCTCCGAGGGTTCCCAATCTTATTGGAGGCAGATTTGTTGATTCACAGTCATTTGCATCAATTGACATTTTAAACCCTGCAAGCCAGCAAGTTGTTTCTCAAGTTCCATTGACTACAGATGAGGAGTTCAAAGCTGCAGTATTTTCAGCAAAACGGGCTTTTTCATCGTGGCGTAACACGCCAGTTACCACTCGGCAGAGAATCATGTTTAAGTTCCAAGAGCTTATTCGTAGGGACATTGATAAGATTGCTATGAATATTAGTACTGAACATGGAAAAACATTGCGAGATGCATATGGTGATGTGTCATGTGGGCTAGAGGTTGTTGAACATGCTTGTGGTATGGCAAATCTGCAAAAGGGGGAATTTGTTCCCAATGTGTCCAATGGAATAGACACATACAGCATTAGAGAGCCCCTTGGTGTTTGTGCTGGTATCTGCCCTTTTGACTTCCCGGCTATGATTCCCTTATGGATGTTTTCTATTGCTGTTACATGTGGAAATACATTTATTCTAAAGCCGTCAGAGAAGGATCCAGGTGACTGCGAAATCCTTCCTGCACTGTTCTACGTGAAGTGA 1218 0.4228 MDVQSSSELNETTHMLPPPPGTFVDREELIQYVGDFSVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPVEDSSAEHSRKRKTGSRLTNCPFEAVGKKEDGLWVLTIKNGTHNHEPLRDISEHPSARRFTESEVLLIKEMTEAGFKPRQILKRLRQSNPELLSTPKHVYNVKAKLRQGNMNVRNFKSLRPEKSAVRNNYLAVIEPSWRQRNPPRVPNLIGGRFVDSQSFASIDILNPASQQVVSQVPLTTDEEFKAAVFSAKRAFSSWRNTPVTTRQRIMFKFQELIRRDIDKIAMNISTEHGKTLRDAYGDVSCGLEVVEHACGMANLQKGEFVPNVSNGIDTYSIREPLGVCAGICPFDFPAMIPLWMFSIAVTCGNTFILKPSEKDPGDCEILPALFYVK. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05078 405 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 209 403 IPR016162 GO:0016491
Seca6g05078 405 Pfam Aldehyde dehydrogenase family 225 398 IPR015590 GO:0016491
Seca6g05078 405 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g05078 405 MobiDBLite consensus disorder prediction 67 87 - -
Seca6g05078 405 SUPERFAMILY ALDH-like 204 401 IPR016161 GO:0016491
Seca6g05078 405 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 52 402 IPR010061 GO:0004491
Seca6g05078 405 MobiDBLite consensus disorder prediction 67 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05078 Seca-Chr6 118051965 118056603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05078 186 401 Aldehyde Dehydrogenase Gene Family AT2G14170 70.507 3.13e-108 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05078 K00140 - qsu:112015070 702.59