Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05076 ATGTCAAATGGAAGCCTTGATTCCCATTTGTATGGAGGGAAAAGCCTTCTGACTTGGGCAGCAAGATACAACATTGCTGGAGGCCTAGCCTCAGCATTATTGTACCTACATGAAGAATGGGAACGTTGTGTGATTCATAGAGACATAAAATCAAGTAATGTAATGTTGGATTCAAATTTCAATGCTAAGCTTGGAGACTTTGGATTAGCCAGGTTGTTAGAGCATGGAAAAGGGTCACAGACAACAGTTTTAGCTGGAACAATGGGATATTTGGCTCCTGAATCTGCCACCAGAGGCAAGGCTAGTAGAGGGTCAGATGTATACAGTTTTGGTATTGTTGCTTTGGAGATAGCCTGTGGAAGAAAACCAATTGAAGTAAAAGCCAGTGAAGAACAAGTCCTTATGGTGGAATGGGTTTGGAAACTTTATGGGATGGGTAATCTATTAGAAGCAGCTGATCCAAGATTGTGTGGAGAGTTTGATGAGCAGGAAATGGAAAGGTTAATGATAGTTGGGCTATGGTGTGCTCACCCAGATCACAATTTGAGGCCTACAATTAGGCAAGCAGTGCATGTACTTAACTCTGAAGCTCCATTGCCCAATCTACCATCAAATATGCCTGAACCCACCTACACTATTCCTTCATTTACTGTACCTGCACCTTCAACCTCTCCACCATCCTCTAGTGCTAATGCTTCTGGACTTGAACTTACTAAAGCAGAGCCTTCATCCAATAGCTCTTACAGTGGCTCCTCACAGTCCAATACATCTGCTGCACTTCTGCACATACTAACTTCAGTAAGTTGA 807 0.4275 MSNGSLDSHLYGGKSLLTWAARYNIAGGLASALLYLHEEWERCVIHRDIKSSNVMLDSNFNAKLGDFGLARLLEHGKGSQTTVLAGTMGYLAPESATRGKASRGSDVYSFGIVALEIACGRKPIEVKASEEQVLMVEWVWKLYGMGNLLEAADPRLCGEFDEQEMERLMIVGLWCAHPDHNLRPTIRQAVHVLNSEAPLPNLPSNMPEPTYTIPSFTVPAPSTSPPSSSANASGLELTKAEPSSNSSYSGSSQSNTSAALLHILTSVS. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05076 268 SMART serkin_6 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05076 268 PANTHER - 1 207 - -
Seca6g05076 268 MobiDBLite consensus disorder prediction 216 255 - -
Seca6g05076 268 Gene3D Transferase(Phosphotransferase) domain 1 1 214 - -
Seca6g05076 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Seca6g05076 268 Pfam Protein kinase domain 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05076 268 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05076 268 SUPERFAMILY Protein kinase-like (PK-like) 1 224 IPR011009 -
Seca6g05076 268 FunFam Lectin-domain containing receptor kinase A4.3 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05076 Seca-Chr6 118033404 118034210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05076 1 211 Receptor kinase-like Gene Family AT5G10530 62.150 5.42e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g05076 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05076 - - vvi:100259008 352.829