Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05072 ATGAGTTCTGAAGGAGTCGGTGAAGATTGCCTAGGATGGGCAGCAAGAGATGCATCTGGAGTTCTGTTACCATACAAATTCAGTCGCAGGACTCTTGGGAATGAAGATGTTCATGTTAAAATTACACACTGTGGTGTTTGTTATGCTGATGTAATTTGGACAAGGAATAAACATGGGGACTCAAAGTATCCTGTTGTGCCTGGACATGAGATTGCTGGGATTGTAACAAAGGTCGGTTCCAATGTCCAACGTTTTAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCAGGGATTGTGAGTTTTGTAATGACAGACTAGAGAATCATTGTATCAAGGGAGTTTACACTTTTAATGCTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTCCATTGTAGTCCATGAAAGGTATTGCTTCATGATACCCAAAAGCTATCCTTTGGCTTCTGCTGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATGCGCCACAAGATGAATCAACCAGGTAAATCTCTAGGAGTGGTTGGTCTCGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTCAGCTCTAGCATATCCAAGAAAGACGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAGATGAGGGCGCTGGCTAATTCATTGGACTTTATAATTGACACAGCATCTGGTGATCACCCATTTGATCCTTACATGTCACTATTGAAGAAATCTGGTGTTCTAGTCCTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTATTCTAGGAATGAGAACTGTTTCCGGAAGTGTGACAGGTGGTACAAAAGAAATACAGGAGATGGTTGACTTTTGTGCTGCTAACGAGATTCACCCAAATATAGAAGTGATTCCAATCGAGTATGCAACTGAAGCTCTTGAGAGGGTCATAAAAAAGGACGTGAAATATCGCTTTGTTATAGATATTGAAAACTCCCTTAAATAA 1065 0.416 MSSEGVGEDCLGWAARDASGVLLPYKFSRRTLGNEDVHVKITHCGVCYADVIWTRNKHGDSKYPVVPGHEIAGIVTKVGSNVQRFNVGDHVGVGTYVNSCRDCEFCNDRLENHCIKGVYTFNAVDFDGTITKGGYSSSIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLGVVGLGGLGHMAVKFGKAFGLSVTVFSSSISKKDEALSLLGADKFVVSSNQEEMRALANSLDFIIDTASGDHPFDPYMSLLKKSGVLVLVGFPSEVKFSPASLILGMRTVSGSVTGGTKEIQEMVDFCAANEIHPNIEVIPIEYATEALERVIKKDVKYRFVIDIENSLK. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05072 354 FunFam Cinnamyl alcohol dehydrogenase 164 319 - -
Seca6g05072 354 Pfam Zinc-binding dehydrogenase 191 313 IPR013149 -
Seca6g05072 354 FunFam Putative cinnamyl alcohol dehydrogenase 6 320 349 - -
Seca6g05072 354 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Seca6g05072 354 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0016616
Seca6g05072 354 SUPERFAMILY GroES-like 16 182 IPR011032 -
Seca6g05072 354 Pfam Alcohol dehydrogenase GroES-like domain 35 147 IPR013154 -
Seca6g05072 354 Gene3D - 164 319 - -
Seca6g05072 354 FunFam probable cinnamyl alcohol dehydrogenase 13 179 - -
Seca6g05072 354 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 184 211 IPR029752 -
Seca6g05072 354 CDD CAD1 12 348 IPR047109 GO:0016616
Seca6g05072 354 SMART PKS_ER_names_mod 20 347 IPR020843 GO:0016491
Seca6g05072 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 317 IPR036291 -
Seca6g05072 354 Gene3D - 13 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05072 Seca-Chr6 118016824 118020251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05072 2 354 Monolignol Biosynthesis Gene Families AT1G72680 74.504 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05072 K00083 - gmx:100806165 628.246