Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05058 ATGGAGAACTACGCTGCATACCCATCGTACCCTGATTCAGGCGACTCATCTCCACGTTCTAGAGAGATCGATTTCGAGAATCCACCACCATGGGACGATCAACAACAACAAAACCAAAACTACAAAGTCAAGTTCATGTGCAGCTATGCTGGCAAGATCCAACCTCGCACACACGATAACCAACTCTCTTACGTCGGTGGCGAGACCAAGATCCTCGCCGTTGATCGCAACATCAAGTTCCCCTCCATGCTTTCCAAGCTCTCTTCTCTATGCAACGTGGACGCCTCTGATCTCTCCTTCAAGTACCAGCTCCCTGGCGAGGACCTTGATGCCCTTATATCTGTCACTAACGATGACGACCTTGACCACATGATGCACGAGTACGATCGCCTCTACCGTGCTTCCGCTAGACCCTCCCGCATGCGATTATTTCTCTTCATCGCAGAAACTCTTCCTCCGGGTTCCCCTTCCTCACAACCCGACCCGGTCAAACCACCCGTTACCAACAACGTCGACTTCCTCTTTGGCCTCGAGAAGCCCAACGTCGCTGTTCCTCCACCTCAGCCACCGCCCGCGGTTGTCAAATTCCATGATCCGGTGCCGGAACCTGTGGCGCCACGTCCTGAGTACCAACCGCGACCCGCTCCGAACCCTGTTGATCGGGTTGTAGGTTCGGATCCGGGAGTGAACCACCCGCTCGACATTCAGAGGCAGTTGCAGCGGCTGCAAATCGCGGAGAATGAGCAAGCTGCGTATCGGAGGAAAAGCGAGGACAATTACCCCGCAGGAGATTATTATGTTCAGAAGCTACCGGATAAATTCCCTCCGGCGTCTAATTTTCCGGTGAGCGGATCACCACAGCAGCAGCACCAGCAGGCGGGTTATTGGCCTGAAAAGCCTGTTTCCGGCGAGGTTTATCCGCCCGGAGGAGGGGAACCACCGGTTTATGTAATTCCGGCGCCGGGAACGTTCTATCATGCGCCAGTGGTGCGTCCACCGGCCACTCAAGGGTACTACGCCGTGCAAAGAGTGCCTTCTGATGGTTACCGTGAACAGCCGGTTTACGGCGGCGTACCACCCCCTAAAGCGCCGTTTTCTTCCCCCGTTTCGGTGACCTTTGCACCGGCACAGCCGGTTAAATCTCCCGCGTATACAGAAGGAGTTAGTGTGGTTCGGCAACCTGGGATACCGGATAATACGGCTGCTGCGTATGCACAGGTGGCGTACGATAGTGCCAGTGGGAGACAGGTTTACTATACTGCCCCGGGTGGTGTAGTGCACGCTCCACCGTACCAAGGAGTTGCTCCGCCTGTCACCACTGATATGAGACAAGCTGGGCTGTCGTTGGGTCAGGATGTTAAAGTAATAAGTAAGATTTCTCAAGGTTCAGTGTGA 1395 0.5477 MENYAAYPSYPDSGDSSPRSREIDFENPPPWDDQQQQNQNYKVKFMCSYAGKIQPRTHDNQLSYVGGETKILAVDRNIKFPSMLSKLSSLCNVDASDLSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFIAETLPPGSPSSQPDPVKPPVTNNVDFLFGLEKPNVAVPPPQPPPAVVKFHDPVPEPVAPRPEYQPRPAPNPVDRVVGSDPGVNHPLDIQRQLQRLQIAENEQAAYRRKSEDNYPAGDYYVQKLPDKFPPASNFPVSGSPQQQHQQAGYWPEKPVSGEVYPPGGGEPPVYVIPAPGTFYHAPVVRPPATQGYYAVQRVPSDGYREQPVYGGVPPPKAPFSSPVSVTFAPAQPVKSPAYTEGVSVVRQPGIPDNTAAAYAQVAYDSASGRQVYYTAPGGVVHAPPYQGVAPPVTTDMRQAGLSLGQDVKVISKISQGSV. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05058 464 MobiDBLite consensus disorder prediction 1 37 - -
Seca6g05058 464 SUPERFAMILY CAD & PB1 domains 58 150 - -
Seca6g05058 464 SMART PB1_new 57 148 IPR000270 GO:0005515
Seca6g05058 464 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 62 148 - -
Seca6g05058 464 Gene3D - 63 148 - -
Seca6g05058 464 Pfam PB1 domain 58 146 IPR000270 GO:0005515
Seca6g05058 464 CDD PB1_UP2 46 146 - -
Seca6g05058 464 Coils Coil 235 255 - -
Seca6g05058 464 PANTHER OS05G0427100 PROTEIN-RELATED 10 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05058 Seca-Chr6 117821929 117823323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05058 41 146 MAP Kinase Kinase Kinase AT5G57610 49.057 1.94e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05058 - - var:108341806 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05058 6 117821929 117823323 Seca6g05058 6 117821929 117823323 ECH
Seca12g05085 12 138527950 138529350 Seca6g05058 6 117821929 117823323 PCT