Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05050 ATGGAGATTTCATCAGTCCGGGGGTTACCTGAACAGGGGATAATAGAGGATCCTAATTTTCTCCATCAGTGGCACTTAAGTTCTATTGATACCACTAGCTTAACAGCTGCTGCTTTTGGAGAGGCTTTACAAAAACATTCATTCTCTAATAGCACAAACTTCAACACCAAAACCTCCTTGGAAACTTCACTCACTGGAATGGAAAGACCCACAAAACAGCTCAAAAACAACAGCTGGAACCACAACAAAAGCCCTCAGACAACAACAGATACACAACTTGCTTCTTGCTCAAATCTTCTTTCATTTGTTGATTCGAATTACACTAGTCAATGGGGACTAATGAAGCCAAAGGTAGAGATGGTGTGTCCTAAAATGGATAACACTACCCTTGCAAACATGTTGATCTCTCAAGGAAACTTGGTGAATGAAAACTATGTCTTCAAAACTTCTTGCCAAGAGGCCAAAAAGATTGTGACACATCCTAAACTTTCTCAACCTCAAGACCACGTAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAGGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGATGAAAACTGTGGAATCTGTGGTAATTGTGAAAAAATCTCAACTATCTAATGATGGTGAAGACTCTTCTTCAGGTACATTTGACGAGACACTGCCTGAAATTGAAGCAAGATTTTGTGAAACAAATGTGCTCATAAGACTACACTGTCTGAAGCATAAAGGAGTTATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAATGCCATGACATTTGGGAGTTTCGCCCTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACAACAAAGGATCTTGTGAGAAACCTACGTGCAGCTTTTTCATCTTTCATATGA 1023 0.4047 MEISSVRGLPEQGIIEDPNFLHQWHLSSIDTTSLTAAAFGEALQKHSFSNSTNFNTKTSLETSLTGMERPTKQLKNNSWNHNKSPQTTTDTQLASCSNLLSFVDSNYTSQWGLMKPKVEMVCPKMDNTTLANMLISQGNLVNENYVFKTSCQEAKKIVTHPKLSQPQDHVIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRMKTVESVVIVKKSQLSNDGEDSSSGTFDETLPEIEARFCETNVLIRLHCLKHKGVIEKTISEIEKLHLKVINSNAMTFGSFALDITIIAQMDVGFCMTTKDLVRNLRAAFSSFI. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05050 340 CDD bHLH_AtNAI1_like 167 239 - -
Seca6g05050 340 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Seca6g05050 340 Coils Coil 203 230 - -
Seca6g05050 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 241 IPR036638 GO:0046983
Seca6g05050 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Seca6g05050 340 PANTHER BHLH TRANSCRIPTION FACTOR 39 337 - -
Seca6g05050 340 Gene3D - 164 235 IPR036638 GO:0046983
Seca6g05050 340 SMART finulus 170 219 IPR011598 GO:0046983
Seca6g05050 340 MobiDBLite consensus disorder prediction 61 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05050 Seca-Chr6 117750460 117753764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05050 1 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.960 8.00e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g05050 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05050 - - gmx:100798018 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05050 6 117750460 117753764 Seca6g05050 6 117750460 117753764 ECH
Seca12g05065 12 137796101 137798731 Seca6g05050 6 117750460 117753764 PCT