Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05048 ATGTTCGCCGGAGGAATTTTCCGTCATGGGTTGTTGCCTATTATTCTCACTGCTCTGTTTTTCCTCTGCCTCGTTACTACCTCTCAATCAGATGAGCTTCAATCACTCATGCAGTTTAAGTCCTCTATCCAAAGTTCAGATGCAAATGTTTTCAGTTCTTGGACACAAACAAATTCTCCCTGCCAATTCACTGGGATTGTCTGCAATTCCAATGGTTTTGTTTCAGAAATCAATCTTGCACGGAAAAAGCTAGTGGGTACCCTTCCTTTTGATTCAATTTGCGAGCTTGAATCACTTGAGAAGATCTCTTTGGAGTCCAACTTCTTGCATGGCAGCATCAGTGAAGGGTTGAGGAATTGCAAAAACTTGCAGTACTTGGATTTGGGTGGGAATCAATTCACTGGGACAGTGCCTGACTTGTCAACTCTGAACAAGTTGAAGTATTTGAATTTAAATGATAGTGGAATTTCTGGGGCATTTCCATGGAAATCATTGGAAAATTTAACTAGTCTCACATTCTTGAGCCTTGGGGACAACCTATTGGAAAAAACTCCTTTCCCTTTGGAGGTCTTAAAGCTTAACAAATTGTATTGGCTTTACCTCTCAAATTGCAGCATCACAGGGAAAATCCCAGTGGGTATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTGCTGACAATCAATTGTCTGGTGAGATTCCAGCTGAAATTGGAAAGCTTCAGAAGCTGAGGCAACTTGAGCTATATGACAACTACTTGAGTGGGGAAATCCCTGTTGGATTTGGCAACCTTACCAATCTTGTTAACTTTGATGCTTCTAATAATCAGCTTGAAGGTGGTCTTTCTGAGCTAAGGTCCTTGACAAACCTTGCATCCCTGCAGCTTTTTCAGAACCAATTATCAGGAACAATTCCAGAAGAGCTTGGTGATCTTAAAAACCTCACAGACCTTTCTCTTTACAGTAACAAGCTCACTGGTCATCTTCCTCAAAAGCTTGGCTCATGGGTAGGCATGCAATTCATTGATGTTTCAGACAATTTGCTTTCTGGTCCTATTCCACCTGACATGTGCAAGAACAACCAAATCACAGACATAGCACTGTTAAACAACAGCTTCACTGGAAGCATACCAGAAACATATGCAAAGTGCACATCTTTGGCTCGTTTCAGCGTAAATAAGAATTCACTCTCGGGTGTTGTTCCTTCAGGTATATGGGGCTTGCCAAATCTGGAGCTAATCGATCTTAGAATGAACCAGTTTGAAGGTCTAATATCATCTGATATTGGCAAAGCAAAATCTCTTGCACAACTGTTTTTATCTGACAATAAGTTCTCAGGTGAGTTACCACTGGAAATCTCAGAAGCTTCTTCATTGGTATTAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATACCAGAAACGATTGGCAAGTTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATCATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATACCAGCTAGCATTGGGTCTTTGCCAACCCTCAATTCATTGAACTTGTCCTCAAACCAGCTTTCTGGTGAAATCCCATCAAGTTTATCATCCCTCAAACTTAGCATTCTTGATTTATCAGACAACCAGTTGTTTGGATCCATACCAGAATCACTGGCTATTTCAGCTTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAAATTTCCAACCTTGTTCAGTGGAATCAGGAAACTCCAGGAGACTCAGAAACTTTTTACTCCTTTTCATTGCTGGTTTAATAGTCCTGTTTGTTTCATCAGCATATTTCATATTCCTGAAACTGAAACAGAACAAGTTTGAGAAGCCACTGAAGAGTAATTCTTGGGATGTCAAGCAGTACCACGTGCTGAACTTCAATGAGAGCGAAATCATTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCAGGGAATGTTTACAAGGTTATGCTTAAAAGTGGGGGAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGATAGGGGAAATTGCAGGAGCAACTCAGCTATGCCTATGCTAAAAAGGAGTTCCAGGTCACGTGAGTATGATGCAGAAGTGGCCACTCTGAGCTCTATAAGGCATGTGAATGTGGTGAAGCTCTACTGTAGCATCACAAGTGAAGATAGTAGTCTTCTAGTTTATGAGTTATTGCCAAATGGGAGTTTGTGGGACAGGTTGCACACCTGGAGAAAGAGCTTAATTTTTCGTGTGCAAAACATTGAACATAAAATTGAGCCAATACCTAGTCACTTGATGGCTTCAGAACAGCAATTTCCAGAACTGAACAGAAATCTTTACCCACCCATAGAACCATACAGTACAGGTTTTTTGAAGGTTTCAGATCTTCACACAATCTACTGGGAGCAATCAGGAAACCCCAGTGGGCATCCGGTTGTCTTCCTTCATGGAGGCCCTGGAGGAGGAACTTCCTCAAGTAATCGGTCATTTTTTGATCCGGAATTTTACCGAATCATACTATTTGATCAGCGAGGTGCAGGGAAAAGCACACCCCATGCTTGCTTAGAGCATAACACCACATGGGACCTCATTGATGACATTGAAAAGTTAAGAGAACACTTGGAGATTCCAGAATGGCAGGTATTTGGTGGGTCATGGGGAAGCACACTTGCCCTTGCATACAGCCAATCTCACCCAGACAAGGTTACTGGCATGGTCCTCAGGGGAATTTTCCTTCTAAGGAAGAAAGAGATTGATTGGTTTTACGAGGGTGGTGCTGCTGCAATATTCCCTGATGCTTGGGAGTCATTTAGAGATCTTATTCCTGAAAATGAAAGAGGATGCTTCATTGATGCCTATAAGAAGAGATTAAACTCAGATGATATCAAAACTCAGCATGCAGCCGCTACAGCATGGACCAAATGGGAAATGATGACTGCTCATCTTCTTCCAAATGAAGAAAACATCAAAAGAGGGGATGATGATAACTTTTCACTGGCATTTGCAAGGATTGAAAACCACTATTTCGTGAACAAGGGATTCTTCCCCTCAGATTCATACCTGTTGGACGGAGTTGATAAAATTAGGCATATCAACACCACAATTGTGCAGGGAAGATACGATGTTTGCTGTCCTATGATGTCTGCCTGGGATCTTCATAAAGCTTGGCCAGAGGCAGATTTTAGGGTGGTTCCAGATGCAGGACATTCAGCCAATGAACCGGGCATAGGTGCTGAACTTGTGGCCGCAAATGAGAAATTAAAAAACATAATCAAGAATAAAGGACTATAA 3381 0.4135 MFAGGIFRHGLLPIILTALFFLCLVTTSQSDELQSLMQFKSSIQSSDANVFSSWTQTNSPCQFTGIVCNSNGFVSEINLARKKLVGTLPFDSICELESLEKISLESNFLHGSISEGLRNCKNLQYLDLGGNQFTGTVPDLSTLNKLKYLNLNDSGISGAFPWKSLENLTSLTFLSLGDNLLEKTPFPLEVLKLNKLYWLYLSNCSITGKIPVGIGNLTQLQNLELADNQLSGEIPAEIGKLQKLRQLELYDNYLSGEIPVGFGNLTNLVNFDASNNQLEGGLSELRSLTNLASLQLFQNQLSGTIPEELGDLKNLTDLSLYSNKLTGHLPQKLGSWVGMQFIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPETYAKCTSLARFSVNKNSLSGVVPSGIWGLPNLELIDLRMNQFEGLISSDIGKAKSLAQLFLSDNKFSGELPLEISEASSLVLIQLSSNQISGHIPETIGKLKKLTSLTLNNNNVSGIIPDSIGSCVSLNQINLAGNSLSGVIPASIGSLPTLNSLNLSSNQLSGEIPSSLSSLKLSILDLSDNQLFGSIPESLAISAFKDGFMGNPGLCSQTLKNFQPCSVESGNSRRLRNFLLLFIAGLIVLFVSSAYFIFLKLKQNKFEKPLKSNSWDVKQYHVLNFNESEIIDGIKAENLIGKGGSGNVYKVMLKSGGEFAVKHIWTSNPSDRGNCRSNSAMPMLKRSSRSREYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYELLPNGSLWDRLHTWRKSLIFRVQNIEHKIEPIPSHLMASEQQFPELNRNLYPPIEPYSTGFLKVSDLHTIYWEQSGNPSGHPVVFLHGGPGGGTSSSNRSFFDPEFYRIILFDQRGAGKSTPHACLEHNTTWDLIDDIEKLREHLEIPEWQVFGGSWGSTLALAYSQSHPDKVTGMVLRGIFLLRKKEIDWFYEGGAAAIFPDAWESFRDLIPENERGCFIDAYKKRLNSDDIKTQHAAATAWTKWEMMTAHLLPNEENIKRGDDDNFSLAFARIENHYFVNKGFFPSDSYLLDGVDKIRHINTTIVQGRYDVCCPMMSAWDLHKAWPEADFRVVPDAGHSANEPGIGAELVAANEKLKNIIKNKGL. 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05048 1126 PRINTS Prolyl aminopeptidase (S33) family signature 868 879 IPR002410 GO:0006508|GO:0008233
Seca6g05048 1126 PRINTS Prolyl aminopeptidase (S33) family signature 842 850 IPR002410 GO:0006508|GO:0008233
Seca6g05048 1126 PRINTS Prolyl aminopeptidase (S33) family signature 911 925 IPR002410 GO:0006508|GO:0008233
Seca6g05048 1126 NCBIfam prolyl aminopeptidase 814 1117 IPR005944 GO:0004177|GO:0005737|GO:0006508
Seca6g05048 1126 SUPERFAMILY L domain-like 191 450 - -
Seca6g05048 1126 Gene3D Ribonuclease Inhibitor 188 283 IPR032675 -
Seca6g05048 1126 FunFam Leucine-rich receptor-like protein kinase family protein 188 284 - -
Seca6g05048 1126 SUPERFAMILY alpha/beta-Hydrolases 807 1102 IPR029058 -
Seca6g05048 1126 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Seca6g05048 1126 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Seca6g05048 1126 SMART LRR_typ_2 408 431 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 480 504 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 288 311 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 168 193 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 96 120 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 528 552 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 217 241 IPR003591 -
Seca6g05048 1126 SMART LRR_typ_2 312 336 IPR003591 -
Seca6g05048 1126 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Seca6g05048 1126 Pfam alpha/beta hydrolase fold 841 1102 IPR000073 -
Seca6g05048 1126 SUPERFAMILY Protein kinase-like (PK-like) 655 779 IPR011009 -
Seca6g05048 1126 Gene3D Phosphorylase Kinase; domain 1 650 760 - -
Seca6g05048 1126 SUPERFAMILY L domain-like 29 235 - -
Seca6g05048 1126 FunFam Receptor-like protein kinase HSL1 290 596 - -
Seca6g05048 1126 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Seca6g05048 1126 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Seca6g05048 1126 Pfam Protein kinase domain 670 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05048 1126 ProSiteProfiles Protein kinase domain profile. 667 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05048 1126 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 22 776 - -
Seca6g05048 1126 SMART LRR_sd22_2 265 293 - -
Seca6g05048 1126 SMART LRR_sd22_2 120 142 - -
Seca6g05048 1126 SMART LRR_sd22_2 143 170 - -
Seca6g05048 1126 SMART LRR_sd22_2 551 570 - -
Seca6g05048 1126 SMART LRR_sd22_2 312 346 - -
Seca6g05048 1126 SMART LRR_sd22_2 217 249 - -
Seca6g05048 1126 SMART LRR_sd22_2 96 119 - -
Seca6g05048 1126 FunFam Receptor-like protein kinase HAIKU2 650 760 - -
Seca6g05048 1126 Gene3D Ribonuclease Inhibitor 284 358 IPR032675 -
Seca6g05048 1126 Gene3D Ribonuclease Inhibitor 467 599 IPR032675 -
Seca6g05048 1126 Gene3D alpha/beta hydrolase 806 1118 IPR029058 -
Seca6g05048 1126 Gene3D Ribonuclease Inhibitor 359 466 IPR032675 -
Seca6g05048 1126 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Seca6g05048 1126 SUPERFAMILY L domain-like 385 573 - -
Seca6g05048 1126 SMART serkin_6 667 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05048 Seca-Chr6 117723104 117733402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05048 16 776 Receptor kinase-like Gene Family AT1G09970 55.686 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g05048 Abhydrolase_1 1.2e-27 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05048 - - gmx:100811489 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05048 6 117723104 117733402 Seca6g05048 6 117723104 117733402 ECH