Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05037 ATGGCGAATTCCAATTGGGTGTTCGATGATGATTATGGTTATCTAGACCTTGACCCACCCAATTTCTCTTGGTCCTCCTCTCCTCCTCCCACCCTCAGTGTGGAACTAGATGACTCGTATGCAAATTCGGATGGTTTCAAGGAAGCTGGCTCAAAAAAACGGTTGAGGTCAGGATCCTGCAACACATCTGCTTCCAAAGCATGCAGAGAAAAAATGCGAAGGGATCGGCTGAATGACAGATTTGTGGAACTGGGTTCTATTCTGGACCCTGGGAGGCCTCCTAAAATGGACAAGGCTGTTATATTGAGTGATGCAGTTCGAGTGGTGTCTCAGCTACGAGAAGAGGCTCAAAAGCTCAAAGAGTCTACCGAGAATCTACAGGAGAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAGCAGCGACTAAAAACAGAGAAAGATAACCTTGAGCAGAAGCTTAAAGCCTTGAATTCACAACCTAGCTTCTTGCACCAACCCCCCACCCTCTCAGCTGCGTTTCCTGCACCAGGACAAGTTGTTGGCAGCAAATTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCTCAGGACCATGTATTACGGCCCCCAGTTGCTTAA 669 0.4723 MANSNWVFDDDYGYLDLDPPNFSWSSSPPPTLSVELDDSYANSDGFKEAGSKKRLRSGSCNTSASKACREKMRRDRLNDRFVELGSILDPGRPPKMDKAVILSDAVRVVSQLREEAQKLKESTENLQEKINELKAEKNELRDEKQRLKTEKDNLEQKLKALNSQPSFLHQPPTLSAAFPAPGQVVGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05037 222 MobiDBLite consensus disorder prediction 43 69 - -
Seca6g05037 222 Pfam Helix-loop-helix DNA-binding domain 64 112 IPR011598 GO:0046983
Seca6g05037 222 PANTHER BHLH TRANSCRIPTION FACTOR 3 222 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca6g05037 222 CDD bHLH_AtILR3_like 66 141 - -
Seca6g05037 222 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 165 - -
Seca6g05037 222 FunFam Transcription factor bHLH34 52 110 - -
Seca6g05037 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 132 IPR036638 GO:0046983
Seca6g05037 222 Gene3D - 53 110 IPR036638 GO:0046983
Seca6g05037 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Seca6g05037 222 Coils Coil 102 164 - -
Seca6g05037 222 SMART finulus 67 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05037 Seca-Chr6 117619227 117621425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05037 3 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.572 1.35e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g05037 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05037 - - ccaj:109814067 336.265