Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05035 ATGGGGCAGAAGCACAAGCGCCCTTCTCCTCTCGAAGAACCACCCACCGCTTCATCCTCCGATTCTGAGGATGATCAACAACCTTCATCCCAACAACAAGACGAAGTAGAAGACGACGAAGAAGCTTCCTCCGAAGAGGAAGCCTCATCCGAAGAAGAGGAAGAAGAAGAAGTTCGACCTTCACCTGCTCAGCAACCTGCTTCCAAAAACCCTCCACCCCCTCCCGCTAATTCCCACCCCAAGCCTTCTTCTTCCGAATCCGCCACCGAATCTGATTCAGGCTCTGACACTGACTCTGACCCGCCCCCACCCGCCCCCGCACGCGCACCCCCTGCTGCTAACTCCAACGTGAAACCCCTCGCATCCAAGCCCATGGACCAGACCCCCAAGCCCAACAAGGCCCAGAACTCCTCTGCTCCCGCTAGATCGGCCACGAAGCGCTCCGCCGAGAACAACGCCCACGTCACTGACTCCAAACGTGCCAAGAAGAAGGCAGCCGATTCTGCCGCCGCCGCTGCCGGTGGTTCCGATGATGAGGTGGAGGAGGACGAGAAGAAGCCCGGCGAGGACAACAGGAAGCTGTTTCAGAGGCTGTGGAGCGAGGAAGATGAGATCGCTATTCTCAAGGGCATTGCCGAGTTCACTTCGAAAACCGGGAGTGACCCGTTAAAGTACGCTGATGCGTTTTACGATTTCATGAAAAAGTCGCTGCATGCAGATGCTTCAAGCAACCAGCTGAAGGATAAGATTCGGAGGCTGAAGAAGAAGTTCGAGACCAATGCAAAGAAAGGGAAGAACGGAGAGGATCCTACTTTCTCCAAACCCCATGAGAAGAAAACTTTTGAATTGTCCAAAAAGGTTTGGTCCAGTGCAGCCAACGAAGCAGTGGCAGAAAAGGCAGAAAAGGCTAAGTCTAATGGGAGAACTGCCAAGACGCCCAAGAAGGAAGGTGGCAGTAGTAGGAATGCAGCTTCTGCGAAGAAACCGAAAGTCGAAGTGAGAGCAGAACCGGAGCAGCAGCAACCCGTGGATTTGAAGGAATCTGGGAAGATGCAGATTGATGAAAAGCCAGAAAAAAGTGTGCTTTTGAGTGAATTGGTTCGTTTTGGGAAGGGTGTGAGTACGTGTGGGCTGAATGAGGATGTGATAAAGAAGGGGGTGGAGTTGATGGAAGAATCAAAGAGGGTAGAGTTGGAGGGTAAGTGGAAGAAATTGCAAGTTGCCGAATTGGAGCTGTTTGTGAAGCGTACACAGCTGATTGAGGATCAGACTAGGTTGATATTGGAGGCGTTCAAGTCATCAGACCATTAG 1311 0.5225 MGQKHKRPSPLEEPPTASSSDSEDDQQPSSQQQDEVEDDEEASSEEEASSEEEEEEEVRPSPAQQPASKNPPPPPANSHPKPSSSESATESDSGSDTDSDPPPPAPARAPPAANSNVKPLASKPMDQTPKPNKAQNSSAPARSATKRSAENNAHVTDSKRAKKKAADSAAAAAGGSDDEVEEDEKKPGEDNRKLFQRLWSEEDEIAILKGIAEFTSKTGSDPLKYADAFYDFMKKSLHADASSNQLKDKIRRLKKKFETNAKKGKNGEDPTFSKPHEKKTFELSKKVWSSAANEAVAEKAEKAKSNGRTAKTPKKEGGSSRNAASAKKPKVEVRAEPEQQQPVDLKESGKMQIDEKPEKSVLLSELVRFGKGVSTCGLNEDVIKKGVELMEESKRVELEGKWKKLQVAELELFVKRTQLIEDQTRLILEAFKSSDH. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05035 436 Pfam Protein of unknown function, DUF573 195 289 IPR007592 GO:0006355
Seca6g05035 436 MobiDBLite consensus disorder prediction 13 27 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 327 353 - -
Seca6g05035 436 PANTHER BNAANNG10740D PROTEIN-RELATED 73 430 IPR007592 GO:0006355
Seca6g05035 436 MobiDBLite consensus disorder prediction 1 194 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 128 151 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 28 58 - -
Seca6g05035 436 Coils Coil 36 56 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 179 194 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 152 166 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 65 80 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 254 353 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 254 284 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 81 98 - -
Seca6g05035 436 MobiDBLite consensus disorder prediction 297 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05035 Seca-Chr6 117604697 117606007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05035 6 430 GeBP Transcription Factor Family AT1G61730 32.579 4.34e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca6g05035 DUF573 9.3e-35 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05035 - - gmx:100791520 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05035 6 117604697 117606007 Seca6g05035 6 117604697 117606007 ECH