Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05022 ATGAATAAAGCAACCATTATTGATGATGCTATCACTTACATCAAGAAGCTGCAAGACAAAGTCCAAAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCAGAAACAAAGATAGATGAAATTGATGCTACAGAAGATATGAAGAAATGGGGGATACAGGTCGTAGAGGTCAGAGTGGCACAAATCAACGAGAATAAGCTCTGGGTCAAGATCATCATTGAACAGAAGAGGGGAAGATTCAATAAATTGATGGAGGCCATGAATAATTTTGACATTGAGTTCATAGATATTAATCTTACAACCACTAAAGGGGCATTTCTGATTACAGGCTGCATACAGGGCAACGATGAGGAGGGACTTGCAGTTCATCAAATCAAGAAGTTGTTGCAAGATATTATCATTGACACATAG 426 0.392 MNKATIIDDAITYIKKLQDKVQSLSQELHQMEATSEETAETKIDEIDATEDMKKWGIQVVEVRVAQINENKLWVKIIIEQKRGRFNKLMEAMNNFDIEFIDINLTTTKGAFLITGCIQGNDEEGLAVHQIKKLLQDIIIDT. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05022 141 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 137 - -
Seca6g05022 141 Gene3D - 1 38 IPR036638 GO:0046983
Seca6g05022 141 Coils Coil 7 41 - -
Seca6g05022 141 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 34 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05022 Seca-Chr6 117505069 117506660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05022 1 138 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 40.411 2.33e-27 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05022 - - gmx:100793107 210.305