Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05017 ATGAACCAAGAATTTTCAGTAGACGAGCAGAGTCTGAATTGTGTAACAAGCAGCACTGGTGGATTCCCAAATTCCTATGGTTACCCTTCAACGTTAATATATGAGGCTGATCCTCAACCACAGAATTCACTTTTCACCAACCCCTCAGTGTATGGGACATCCTCCAATGAACTGTCACCAACTTGGTCTAAAGTCTCTACTTCCCTTATGAAACCCTCCATGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAATAACACTCCTTTTTGGAATGCTTCAGCCGAGGCACTTCATGACATAAGAGCAGGAGTTTTTGCTTCTTCATCCCAGGGGCAATACCAAACACCAAATTTTGAAGAGAAAAAACTCAGTAGCCCAAGTAGTACTCTATTAAGCAAGCTGAAGAGAGAAGAGTCTCCAGACACGGGAAAGAAAAGTTGTTCTGAGCCTGCCCTTAAGAGGCCAAGAATTGAGACCCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAACTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTCCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACACCATATATGAAAAATGGAGCTCCCATTCAACAACACCAGGGTTGTGATAATGGGAAGGAGGCAGAAGGGGGAAAAGAAGATCTAAGAAGTCGAGGGCTGTGTTTGGTACCAATTTCAAGCACATTTCCGGTGACGAATGAGACCACTGTTGATTTCTGGACGCCAACATTCGGAGGCCCACTCATTGGCAGATAG 843 0.4472 MNQEFSVDEQSLNCVTSSTGGFPNSYGYPSTLIYEADPQPQNSLFTNPSVYGTSSNELSPTWSKVSTSLMKPSMPKQQLSGLHFSNNTPFWNASAEALHDIRAGVFASSSQGQYQTPNFEEKKLSSPSSTLLSKLKREESPDTGKKSCSEPALKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGAPIQQHQGCDNGKEAEGGKEDLRSRGLCLVPISSTFPVTNETTVDFWTPTFGGPLIGR. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05017 280 FunFam Transcription factor bHLH123 family 168 230 - -
Seca6g05017 280 MobiDBLite consensus disorder prediction 135 153 - -
Seca6g05017 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 259 - -
Seca6g05017 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Seca6g05017 280 MobiDBLite consensus disorder prediction 116 164 - -
Seca6g05017 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
Seca6g05017 280 CDD bHLH_AtbHLH_like 164 215 IPR045239 -
Seca6g05017 280 MobiDBLite consensus disorder prediction 116 134 - -
Seca6g05017 280 Gene3D - 168 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05017 Seca-Chr6 117472834 117474275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05017 3 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.416 4.92e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05017 - - gmx:100805087 413.69