Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05012 ATGGCGGGTCAGCTTCCGGAGCATTTCAAGTGTCCCATTTCGCTCGAAATTATGTCCGACCCGGTTATCCTCCAATCGGGTCACACATTCGACCGTTCTTCAATCCAACGCTGGCTCGACGCCGGTCACCGCACTTGCCCAATTACCAAACTACCCCTCCCTGAACACGCTTCCCTCATCCCCAACCACGCCCTTCGAAGCTTGATTTCCAACTTTGCCCCTATCTCCCCTCTCCTCCACCACCCTCCCCCGCCCCAACCAGAAACCCTAATCTACACCCTCACCTCTCCCTCCTCCTCCTCCCACTCCAAATTCGACTCTCTCCGACAACTCACCCAACTCGCCAACACTGACTCCCTCTTCCGCCGCCGTCTAACCGACTCAGCCGTCGTGCCGGCACTCCTCTCCTGCGTCGACTCCGTCGACGACTCCCTCCGCGAGAAAGCCCTCTCCCTCTTGCTTAACCTCAGCCTCGACGACGACAACAAGGTTGGCCTGGTGGCCGAGGGCGTGGTTGGCCGCGTCGTCGCCGTTCTAACCGCCGGCCCCTCCGATTGCCGCGCCGTGGCGGCGACTCTGCTGACAAGCTTGGCAGTCGTGGAGGTGAACAAGGCGACGATCGGCGCGTACCCGCACGCGATTGAAGCTCTGGTTTCCCTCGTTCGGGACGGGAAAGGGAGAGAGAAGAAAGAAGCGGCTACGGCGCTGTACGCTATCTGTTCCTTCCCTGATAATCGGAGAAGAGCGGTGGAATGTGGGGCTGTGCCCGTTTTGCTTCGAAGTGCGGATTCTGGACTTGAAAGGAGTGTTGAAGTTTTAGGGGTTCTGGCTAAGTGTAAAGAAGGAAGGGAGCAGATGGAAAGGTTTCGTTGGTGTGTGCAGATTCTGGCTCGGGTGTTGATCAATGGAACCTCAAGAGGGGTTCAGTATGCTCTGTTGGCTCTCAATAACCTCTGTTGTAACAGTGAAGCCACTGTTCTTGAGGCCGTGAAAGCTGGGATTTTGGAAATTTGTCTCGGGTTGCTGCATGATGATAATGAGAAGGTGAGGAGGAATTCCTCGTGTTTGATTCAGGTTCTCCGTGGCAACCATGGGAGGATGAGTTGA 1107 0.5637 MAGQLPEHFKCPISLEIMSDPVILQSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHASLIPNHALRSLISNFAPISPLLHHPPPPQPETLIYTLTSPSSSSHSKFDSLRQLTQLANTDSLFRRRLTDSAVVPALLSCVDSVDDSLREKALSLLLNLSLDDDNKVGLVAEGVVGRVVAVLTAGPSDCRAVAATLLTSLAVVEVNKATIGAYPHAIEALVSLVRDGKGREKKEAATALYAICSFPDNRRRAVECGAVPVLLRSADSGLERSVEVLGVLAKCKEGREQMERFRWCVQILARVLINGTSRGVQYALLALNNLCCNSEATVLEAVKAGILEICLGLLHDDNEKVRRNSSCLIQVLRGNHGRMS. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05012 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Seca6g05012 368 PANTHER U BOX DOMAIN-CONTAINING 6 341 - -
Seca6g05012 368 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Seca6g05012 368 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Seca6g05012 368 CDD RING-Ubox_PUB 6 53 IPR045210 -
Seca6g05012 368 SMART arm_5 118 158 IPR000225 GO:0005515
Seca6g05012 368 SMART arm_5 203 241 IPR000225 GO:0005515
Seca6g05012 368 SMART arm_5 321 362 IPR000225 GO:0005515
Seca6g05012 368 SMART arm_5 159 199 IPR000225 GO:0005515
Seca6g05012 368 SMART arm_5 279 320 IPR000225 GO:0005515
Seca6g05012 368 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Seca6g05012 368 SUPERFAMILY ARM repeat 89 360 IPR016024 -
Seca6g05012 368 SUPERFAMILY RING/U-box 3 72 - -
Seca6g05012 368 Gene3D - 83 366 IPR011989 -
Seca6g05012 368 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05012 Seca-Chr6 117435386 117436492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05012 1 362 U-box Gene Family AT4G21350 60.705 1.26e-148 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05012 - - pcin:129286672 504.212