Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05011 ATGGAGAAAACAGAGTTCACCCTTCTATTTCTTGCAACTTGTTGCTATGTGATATCTCTGTTTCCAATAATTTTGGTAGCAGAGGATAGCATAACTCCACCACAAGCCATCAGTGGCAACCAGACACTAGTCTCACCTGCCCAAAATTTTGAACTGGGTTTCTTCACTCCTGGCACTTCCACTCACAGATATCTTGGAATATGGTACAAGCACATTCCAAAGCAAACTGTTATTTGGGTTGCAAATAGGGACAAACCACTTGTTAACTCTGGTGGCTCCTTAACATTCAGCAATGATGGGAACCTCATCCTTCTCAGCCACACTGGAAGTGTTCTATGGTCCTCAAATTCCTCTGGACCTGTAAGAAACCCAGTAGCACAGCTTCTAGACTCTGGAAACTTTGTTTTGAAGGACTTTGAAGATGAGGGATATTTGTGGCAGAGTTTTGATTATCCTTCTGACACGTTGCTACCAGGAATGAAGCTTGGTTGGAACTTCAAAACTGGCTTGAACATACATTTGACTTCTTGGAAAAACACTGATGATCCTTCTTCTGGAGAATACACCTATAGTGTGGATCCCCGTGGCCTTCCTCAGCTTTTTCTCCTTAAGGGAAACAAGAAGGTCTTCAGAAGTGGACCATGGTATGGTCAACAATTTAAAGGTGACCCAGTTCTCAATCAAAATCCAATTTTCAAACCTATATTTGTTTTTGATTCTGATGAAGTGTCTTACTCATTTGAGACTAAAGACAATATCATTTCAAGATTTGTGCTTAGTCATTCTGGTTTGATTCAGCATTTCTCATGGAATGATCATCATTCCAGTTGGTTCTCTGAATTCACAATTCAAGGGGACCATTGTGATGACTATGGCCTTTGTGGTGCTTATGGAACTTGCAACATCAAAAGCTCTCAGATTTGCAGGTGTTTGAAAGGTTTTGAGCCTAGGCTTCCACAAGAATGGAAAAAGCTTGAGTGGTCAGGTGGATGTGTTGTTAGGAAGAATTCTCAGGTTTGCAGAAATGGAGATGCATTTAAGCTGTTTACAGGAATGAAACTACCAGATGCTGCAGAGTTTCATACAAACTATAGTATCAGCATTGATCACTGTGAAGCAGAATGCTCCAAGAATTGCTCTTGTGTAGCTTATGCTAAACTAGACATAAATGCAAGCGGCAAAGGCTGTATTGCTTGGTTTGGGGAGTTATTTGACATAAGAGATGTTTCTGTGAATGGGCAAGATTTCTATGTGAGAGTTCCAGATTCAGAACTAGGTAAGAACATTCAAGATTCAAATGTTGACGGAAACAAAGGGAAGAAACTAATACTGCTACCTGTGACTATATCGGTAGCCTCAACTATTGTTGTCTCAGCATTATGGTTGATATTAAGAAATGGAGAAGAAAAGGGCGGAGAGACAGATATGCAAATGCAATTTAGTGTTGGCAGAAATAGGAGTGAGAGGAATGAGTTTGAGCTCCCATTATTTGAGATTGCCAGTATTGAAGCAGCCACAGGAAATTTCTCAATTTACAATAAGATTGGAGAAGGTGGATTTGGTCCGGTATACAAAGGTCAACTTCCTTCAGGAGAGGAAATAGCGGTGAAAAGGCTGTCAGAGAGTTCTGGACAAGGGCTGCAGGAGTTCAAGAATGAGGTTATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTCAGGGAGAAGATAAAATGTTGGTCTATGAGTACATGCCAAATAGAAGCTTGGACTCCTCATTATTTGATGAAACCAAGCGTTCTGTGCTTGATTGGCAAAAAAGGCTAGACATTATTATTGGCATTGCTCGGGGACTTCTCTACCTTCACAGAGATTCAAGACTAAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGACAGTGAAATGAACCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAAACCAAGAGTATAGTTGGAACCTATGGATATATGCCCCCAGAGTATGCAATGGATGGACACTTCTCTTTCAAATCGGATGTTTTTAGCTTTGGGGTTTTACTCTTAGAGGTGTTGAGCGGCAAGAAAAACAAAGGATTTCTTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGAAGGTTTGGAATGAAGATAGGGCCTTGGAGGTGATGGATCCATTGCTTGAGAATCAGTTTCCGACCTCTGGAGCATTAAGGTGTATTCAAGTGGGTCTTTTATGCGTTCAACAATGCCCAGAAGATAGGCCAACAATGTCAACAGTGCTTTTGATGTTGGACAGTGAGAGTGTGTTGCTCCCCCAACCTGGAAGGCCAGGATTATATTCAGAGAGATGTTTCTTAGAGACAGATTCATCATCACGTGGTGGACTGAATTCTGGGTTCAATGACATAACCGCTTTAGTAGAGGGTCGCTAG 2481 0.4123 MEKTEFTLLFLATCCYVISLFPIILVAEDSITPPQAISGNQTLVSPAQNFELGFFTPGTSTHRYLGIWYKHIPKQTVIWVANRDKPLVNSGGSLTFSNDGNLILLSHTGSVLWSSNSSGPVRNPVAQLLDSGNFVLKDFEDEGYLWQSFDYPSDTLLPGMKLGWNFKTGLNIHLTSWKNTDDPSSGEYTYSVDPRGLPQLFLLKGNKKVFRSGPWYGQQFKGDPVLNQNPIFKPIFVFDSDEVSYSFETKDNIISRFVLSHSGLIQHFSWNDHHSSWFSEFTIQGDHCDDYGLCGAYGTCNIKSSQICRCLKGFEPRLPQEWKKLEWSGGCVVRKNSQVCRNGDAFKLFTGMKLPDAAEFHTNYSISIDHCEAECSKNCSCVAYAKLDINASGKGCIAWFGELFDIRDVSVNGQDFYVRVPDSELGKNIQDSNVDGNKGKKLILLPVTISVASTIVVSALWLILRNGEEKGGETDMQMQFSVGRNRSERNEFELPLFEIASIEAATGNFSIYNKIGEGGFGPVYKGQLPSGEEIAVKRLSESSGQGLQEFKNEVILISQLQHRNLVKLLGCCIQGEDKMLVYEYMPNRSLDSSLFDETKRSVLDWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKASNVLLDSEMNPKISDFGMARMFGGDQTEAKTKSIVGTYGYMPPEYAMDGHFSFKSDVFSFGVLLLEVLSGKKNKGFLHPDHKLNLLGHAWKVWNEDRALEVMDPLLENQFPTSGALRCIQVGLLCVQQCPEDRPTMSTVLLMLDSESVLLPQPGRPGLYSERCFLETDSSSRGGLNSGFNDITALVEGR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05011 826 CDD B_lectin 37 152 IPR001480 -
Seca6g05011 826 Gene3D Transferase(Phosphotransferase) domain 1 585 786 - -
Seca6g05011 826 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05011 826 Pfam Protein tyrosine and serine/threonine kinase 511 777 IPR001245 GO:0004672|GO:0006468
Seca6g05011 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Seca6g05011 826 CDD PAN_AP_plant 341 421 - -
Seca6g05011 826 PIRSF SRK 1 824 IPR024171 GO:0004674
Seca6g05011 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 149 - -
Seca6g05011 826 Gene3D Phosphorylase Kinase; domain 1 473 584 - -
Seca6g05011 826 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Seca6g05011 826 Gene3D - 23 149 IPR036426 -
Seca6g05011 826 SMART blect_4 34 152 IPR001480 -
Seca6g05011 826 SUPERFAMILY Protein kinase-like (PK-like) 491 780 IPR011009 -
Seca6g05011 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Seca6g05011 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Seca6g05011 826 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Seca6g05011 826 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Seca6g05011 826 CDD STKc_IRAK 515 781 - -
Seca6g05011 826 SMART ntp_6 341 420 IPR003609 -
Seca6g05011 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Seca6g05011 826 Pfam D-mannose binding lectin 76 178 IPR001480 -
Seca6g05011 826 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Seca6g05011 826 SMART serkin_6 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05011 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 771 - -
Seca6g05011 826 Pfam PAN-like domain 340 406 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05011 Seca-Chr6 117419295 117423162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05011 438 795 Receptor kinase-like Gene Family AT4G05200 53.719 5.16e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05011 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05011 - - gmx:100804024 1447.18