Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05008 ATGAGAGGTTCTACAATCCTTCAAATCTTCTGTTTTTGTACCTTCACTTTACCCGCGTTCTTTTCCGGTATTGTAGCATCCGTGAATACCTTAAATGCAACTCAATCTCTTAGAGTTAACCAAACCCTTGTATCTCCACAACAAGTATTTGAATTTGGCTTCTTTAATACAAGCATCTCGAGATGGTACTTGGGTATATGGTACAAGGACTTTCCTGACAAAACAGTGATTTGGGTGGCAAACAGAGACACCCCATTTGGAAATTCCAATGCAACTCTCAAGATTGGAGATAGGGGGAACCTGCTTCTTCTTAATCAAACAGATAACCCCATATGGTCATCAAATCAAACCACTGCTGTTACAAACCCAGTTCTTAAGCTTTTTGATAATGGGAATTTGATTCTCATGGAAGCAAACGAGAAAGACACCAACAACTATTTATGGCAGAGCTTTGATGATCCAACAGATACTTTGTTACCAGGCATGAAGCTTGGTTGGAACCTAGACACTGGTGTGGAGCGCCGCATAACATCATGGAGAGGCCAAGATGATCCATCAATAGGAGATTCTTATTTCACTCTAAATTACCATGGGATGCCAGATATTTTCTTATGGAACAAACAGCAAAGGGTGTTTAGAACTGGACCATGGAATGGTGAGAGGTTTGGTGGAGTACCAATACTAAACACAATTGCTGCTCTTAATGATAGTATAGTTGCTGATGAACATCAAGTGTATTACCTCCCTTCAATGCTCAATCAATCAAGCTTGTCCAGACTTGTTGTGAACTGGACAGGAACAATTGAACGGTATGCATGGATAGAGAGTAGTCAAAGTTGGAGTCAAATATGGATTGCACCAAATGCCGATTGTGATCACTATGGGGCGTGCGGTCCCTTTGGTATATGTGATTCAAATAGTTTCCCAATGTGCCAGTGTATTCAAGGATTCAATGTCAAGAATCAGCGCCAATGGGATTTGAAAAACTTTTCTGATGGGTGTACTAGGAAGACAGAATTGGAATGTGGGAAAGACAAGTTCTTGAACATGACCAATGTGCAGCTTCCAGATGCCACAAAGGTGTTTGTGGACAAAAACATGACCCTATTGGAATGTAGAAATATGTGCCAGATGAATTGCTCTTGCACTGCCTATGCTAATGCAGAGATTACTAATGGTGGAACTGGTTGTGTGATGTGGACTGATAATCTCATAGACATGAGGCAGTTTTCTGAAGGTGGTCAAGATCTCTATATCAGATTAGCAGCTTCTCATTTCAGTTTCTTCTCAGATGACAATGGCACAGGATCTGTTGGTGGCTCTCACAAGAAAAAGAATTCAGGAAAGATTGCAGGAATTACAGTTGCTGTGATCCCTTGCTGCTTCATACAATGTTTTGTTATTCTCTCTAAACCAGGTAATTCTGAAAGAGGCCAGGAGACGTTGCAACCTGAGGTAATAATACATGTAGATGAAAGGAACACGGATGACCTGGAGTTGCCATTGTTTGATTTTAATACCATAACACAAGCTACAAACTACTTCTCTTTAGCAAATAAACTTGGAGAAGGAGGCTTTGGAAGCGTTTACATGGGTAGGCTAGTGGATGGCCAAGAAATTGCTGTGAAAAGGTTATCAACAAGCTCTGGGCAAGGAAATGAAGAGTTCCTGAATGAGGTCAGATCCATTGCAAAGCTTCAACATCGGAATCTTGTACGACTCTTTGGTTGCTGCTTTGAGAAAGAAGAGAAAATGTTGATCTATGAGTACATGGAAAATAAGAGCCTAGATTCTATTTTATTTGACACAGCAAAGAGTTCCATACTAGACTGGCCAATGCGCTTCAACATTATATGTGGAATAGCCAAAGGGCTTCTTTATCTCCATCATGACTCCAGATTTAGAATTATCCATAGGGATCTCAAGGCAAGCAACATTCTTCTTGATAGAGAAATGAATCCAAAGATATCAGATTTTGGGGTTGCTAGAATTTTTGACAGTGATCAAACACATGCAAACACAAGGAGAGTTGTTGGAACATATGGCTATATGTCTCCCGAATATGCAATGGGGGGATTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTAGTATTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCTTCAGATGACTTAAATCTTATTGGACATGCATGGAGGCTATGGAAAGAAGGGAATGCATTGGAAATAATGGATTCGTCATTTGTTGATTCATATTCAGAATCTGAAGTTGTAAGATGCATACATGTTGCGTTCATATGTATCCAAGAACGAGCAGAAGACAGACCCACAATGTCTAATGTGGTGTTAATGTTGAGTAGTGAAACTGCATCAATGGCAGAGCCTAAACACCCTGGTTTCGTCCTCGGAAGGAGTTCCGGGGAAAGCGACTCTTCTTCGGCTAGGCAAGATGAATCATACTCATACACGATAAACCAAGTCACAGTTACAAGACTAGATGGCAGGTAG 2508 0.4043 MRGSTILQIFCFCTFTLPAFFSGIVASVNTLNATQSLRVNQTLVSPQQVFEFGFFNTSISRWYLGIWYKDFPDKTVIWVANRDTPFGNSNATLKIGDRGNLLLLNQTDNPIWSSNQTTAVTNPVLKLFDNGNLILMEANEKDTNNYLWQSFDDPTDTLLPGMKLGWNLDTGVERRITSWRGQDDPSIGDSYFTLNYHGMPDIFLWNKQQRVFRTGPWNGERFGGVPILNTIAALNDSIVADEHQVYYLPSMLNQSSLSRLVVNWTGTIERYAWIESSQSWSQIWIAPNADCDHYGACGPFGICDSNSFPMCQCIQGFNVKNQRQWDLKNFSDGCTRKTELECGKDKFLNMTNVQLPDATKVFVDKNMTLLECRNMCQMNCSCTAYANAEITNGGTGCVMWTDNLIDMRQFSEGGQDLYIRLAASHFSFFSDDNGTGSVGGSHKKKNSGKIAGITVAVIPCCFIQCFVILSKPGNSERGQETLQPEVIIHVDERNTDDLELPLFDFNTITQATNYFSLANKLGEGGFGSVYMGRLVDGQEIAVKRLSTSSGQGNEEFLNEVRSIAKLQHRNLVRLFGCCFEKEEKMLIYEYMENKSLDSILFDTAKSSILDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNILLDREMNPKISDFGVARIFDSDQTHANTRRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSSDDLNLIGHAWRLWKEGNALEIMDSSFVDSYSESEVVRCIHVAFICIQERAEDRPTMSNVVLMLSSETASMAEPKHPGFVLGRSSGESDSSSARQDESYSYTINQVTVTRLDGR. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05008 835 SMART ntp_6 342 421 IPR003609 -
Seca6g05008 835 MobiDBLite consensus disorder prediction 796 820 - -
Seca6g05008 835 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Seca6g05008 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 480 590 - -
Seca6g05008 835 FunFam Receptor-like serine/threonine-protein kinase SD1-8 24 151 - -
Seca6g05008 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 776 - -
Seca6g05008 835 Pfam D-mannose binding lectin 75 180 IPR001480 -
Seca6g05008 835 CDD STKc_IRAK 521 785 - -
Seca6g05008 835 Gene3D Transferase(Phosphotransferase) domain 1 591 797 - -
Seca6g05008 835 SMART serkin_6 515 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05008 835 Gene3D - 24 151 IPR036426 -
Seca6g05008 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 793 - -
Seca6g05008 835 Gene3D Phosphorylase Kinase; domain 1 489 590 - -
Seca6g05008 835 Gene3D Hepatocyte Growth Factor 340 421 - -
Seca6g05008 835 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Seca6g05008 835 CDD B_lectin 34 154 IPR001480 -
Seca6g05008 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Seca6g05008 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Seca6g05008 835 SMART blect_4 34 154 IPR001480 -
Seca6g05008 835 Pfam PAN-like domain 342 407 IPR003609 -
Seca6g05008 835 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Seca6g05008 835 Pfam Domain of unknown function (DUF3403) 787 835 IPR021820 GO:0004674
Seca6g05008 835 SUPERFAMILY Protein kinase-like (PK-like) 499 806 IPR011009 -
Seca6g05008 835 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Seca6g05008 835 MobiDBLite consensus disorder prediction 805 820 - -
Seca6g05008 835 PIRSF SRK 2 835 IPR024171 GO:0004674
Seca6g05008 835 Pfam Protein tyrosine and serine/threonine kinase 517 783 IPR001245 GO:0004672|GO:0006468
Seca6g05008 835 CDD PAN_AP_plant 338 422 - -
Seca6g05008 835 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05008 Seca-Chr6 117404712 117407989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05008 503 835 Receptor kinase-like Gene Family AT4G11530 57.864 3.73e-130 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05008 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05008 - - aip:107621503 1111.67