Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05007 ATGAGAGGTTCTACAATCCTTCAAATCTGTTTTTTTTGGACCTTCACTTTATCAGCATTCTTTGTCAATACCGTACTCTCGGCGGATACCTTAACTGCAACTCAATCTCTTGGAGCTAACCAAACACTTGTATCTCCACAGCAAGTCTTTGAATTTGGTTTCTTTAATACAAGCATCTCGAGATGGTATTTGGGTATATGGTACAAGGACTTTCCTGACAAAACAGTGATTTGGGTGGCAAACAGAGACACCCCACTTGAAAATTCCAATGCAACGCTCAAGATTGGAGATAGGGGGAACTTGCTTCTTCTTAATCAAACAGGTAACCCAATATGGTCATCAAATCAAACCACTTCTGCTACAAACCCAGTTCTTCAGCTTTTTGATACAGGGAATTTGATTCTCAAGGAAGCAAACGAGAAAGACATCAACAACTATCTGTGGCAGAGCTTTGATGATCCAACAGATACTTTGTTAGCAGGCATGAAGCTGGGTTGGAACTTGGACACTGGCGTGGAGCGGCGTATAACATCATGGAAAAGCCAAGATGATCCATCCATAGGAGATACTTATTTCAGTCTAAATTATCATGGGATACCAGATGTTTTCTTATGGAACAAACAACAAAGGGTGTTTAGAACTGGATCATGGAATGGTGAGAGGTTTGGTGGAGTACCAATACTAAACACAATTGCTCCCCTTAATGACACTATAGTTGCTGATAAACATCAAGTGTATTACCTCCCTTCATCACTCAATCAGTCTAGCCTGTCCAGACTTATTGTGAACTGGACGGGAGTAATTGAAAGGTATGCATGGATAGAGAGTAGTCAGAGTTGGAGTAAAATATGGTCTGCACCTGATGGTGATTGTGATCATTATGGAGTGTGCGGTCCCTTTGGTATATGTGACTCAAATAGTTTCCCAGTATGCCAGTGTATTCAAGGGTTTAATGTCAAGAATCAGGGGCAATGGGATTTGAGAAATTTCTCTGATGGGTGTACTAGGAAGACAGAATTGGAATGTGGGAAAGACAAGTTTTTGCACAAGACAAATGTGCAGCTGCCAGATGCCACAAAGGTGTTTGTGGACAAAAACATGACCCTATTGGAATGTAGAAATATGTGCCAGATGAATTGTTCTTGCACTGCCTATGCTAATGCAGAGATTACTAATGGTGGGACTGGTTGCGTGATGTGGACTGATAATCTCATTGACATGAGGCAGTTTTCTGCAAATGGTCAAGATCTCTATGTCAAATTAGCAGCTTCTGATTTCAATTTCTTCTCAGATGACAGTGGCACAGGATCTCCTGGTGGGTCTGACAAGAAAAACAATGCAGGAATGATTGTAGGAATTGCAGTTACTGTAGCTATAGTAATTTTGGGAGTGATTATATTCATTTTGTGGAAGAAGAGAAAACTGCATAGTATATTGAGGTGGAATAAGAAGCAGGATGGTAATTCTGAGAGAGGTCAGAAGACACTGCTACCTGAGGTAATAATACATTCAATTAACAGAGAACACGCAGATGAAAGGAACATGGATGACCTGGAGCTACCATTGTTTGATTTTAATACCATAACACAAGCTACAAACTACTTCTCTCTAGCAAACAAACTTGGAGAAGGAGGCTTTGGAAGCGTTTACATGGGTAGGCTTGTGGATGGCCAAGAAATTGCTGTGAAAAGGCTATCAACAAGCTCTGGACAAGGAAATGAGGAGTTCAAGAATGAGGTCAGATCTATTGCAAAGCTTCAACATCGAAATCTTGTAAGACTGTTTGGTTGCTGCATTGAGAAAGAAGAGAAGATGTTGATCTATGAGTACATGGAAAATAAGAGCCTAGATTCTATTTTATTTGACACAGAAAAGAGTTCCATACTAGACTGGCCAATGCGCTTCAACATTATATGTGGAATAGCCAAGGGGCTTCTTTATCTACATCATGACTCAAGATTTAGAATTATCCATAGGGATCTCAAGGCAAGCAATATTCTTCTTGATAGAGAAATGAACCCAAAGATATCAGATTTTGGGATTGCTAGAATTTTTGACAGTGATCAAACACAAGCAAACACAAGGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGTGGATTCTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTAGTGTTAGAGATCATAAGTGGCAAGAAGAACAGAGGATTTTATTCCAATGATGACATAAATCTTCTTGGACATGCATGGAGGCTGTGGAAAGATGGGAGTGCATTGGAACTAATAGATCCATCATTTGGTGATTCATATTCAAAATCTGAAGTTGTAAGATGCATACATGTTGGTCTCATATGTGTCCAAGAACGGGCAGAAGACAGGCCAACAATGTCTACTGTGGCCTTGATGTTGAGCAGCGAAACTTCATCATTGCCAGAACCTAAACACCCTGGTTTTGTCCTTGGAAGGAGTTCCGAAGAAACCGATTCTTCTTCGGCTAAATCTCACACGATAAACCAAGTCACAGTTACAAGACTAGATGGCAGGAAGCTCCAAAAGTTGCTACTTGGGGATATGGTACAAGAATATCACACCCCAAATGTTTGGGTTGCAAACAGAGAAAAACCACTTAATGACTCGAGTGGAAACTTAACCATTGGTGCTGATGGGAATATTTTACTTGTTGATGGAGCAGGTAACAGAATATGGTTTACAAACTCATCAAGATCAATTCAAGAGCCAATTGCAAAGCTGTTAGATTCTGGAAACTTAGTTTTGATGGATGGAAAGAACAATGATTCTTTTAGTTACATATGGCAAAGCTTTGATTATCCAACAGACACAATGTTACCAGGCATGAAGTTGGGTTGGGATAAGACCTCAGGTATGAACAGATATTTGACTTCATGGAAGAGTGCTAATGACCCCTCTCCTGGAAGCTTTACCTACAGCTTTGACCACAAAGAATTTCCTGAGTTGGTAATCCGCCAGAGAATGAATATCACATTCAGAAGTGGGATTTGGAATGGAATTCGTTTTAATTCAGATGATTGGACATCATTTACAGGAATTACAGCCTTCAGGCCTCAACTTTTAGTGACCAACAATGAGGTAGTATATTGGGATGAACCTGGAGATAGATTGTCAAGGTTTGTGTTGAAGGATGATGGACTGCTTGAAAGATATATATGGGACAACAAAGTTGTTCAGTGGATTGAAATGTATGAGGCAAGAAAAGACTTCTGTGATAATTATGGAGCATGTGGGAGTAATGGTGTTTGCAATATTAATGATGTGCCTGTTTACTGTGACTGTTTGAAAGGATTCAAACCTAAATCACAAGAAGAGTGGGATTCATTTAATCGGTCTAGTGGTTGCATAAGGAGAACACCGTTAAACTGCACTCAAGGTGACAGATTTCAGAAATTAAGCAGGGTGAAACTGCCCATGTTGTTGCAATTCTGGACAAACAATGGCATGAGTCTTGGAGAATGTGAAGTGGAATGCTTGAAAAACTGCTCTTGCACTGCCTATGCAAATTCTGCCATAAATGAAGGCCCCCATGGATGCTTGCTTTGGTTTGGGAATTTGATTGACATTAGGCTGCTTATAAGTAAAGAGGATGTACAACTGGATCTTTATGTAAGGTTAGCCGCTTCAGAAATAGACTCCACCACTAATGCTAGTAAAAGGAGAAAGATGGCACTGATTATTTCAGCATCTTTGGCACTGCTTCTTTTGTGTACCATTTTCTACCTTTCTAAGAAGTGTACTAAATGGAAGAGCACTACTGATTTAGTCGCAATGGCAGGGCATGGAAATCAGAATGAAGATCAAACATCACCTCTTTTTGATATAGAAACTATTCTAGCAGCTACAAACAATTTTTCTATTGAAAACAAGATTGGGGAAGGGGGCTTTGGCCCATTATACAGGCGTAAATTGGCTCAAGGACAAGAAATAGCTGTGAAAAGGCTATCAAAAACCCCAAGAGAAGGCATGTCAGAGTTTATGAATGAAGTTGGATTGGTAGCCAAACTTCAACACCGTAATCTTGTGTGTGTTTTGGGTGGGTGCACTCAAGGAGAAGAAAGAATGTTGGTCTATGAATACATGCCTAATGGTAGTTTGAACCGCTTCATTTTTGATCCTATACGAGGAAAATTTTTACAATGGAGGAAACGATATGAAATTATTGTGGGGATTGCTCGAGGACTACTTTATCTTCATCAAGATTCAAAACTAACCATCGTTCACAGGGATCTAAAAACTAGTAATATTCTACTTGATAGTGAATTGAACCCCAAAATTTCTGATTTTGGTATGGCCCACATCTTTGAAGGAGATCATTCTGCAGTAACAACAAAAAGAATTGTTGGGACAGTTGGTTATATGTCCCCAGAGTATGCAAGAAACGGGCATCTCTCCCTAAAATCTGACGTATTTAGCTTTGGAGTTATAGTGTTAGAGATATTGAGTGGCATCAGAAATAATAGCTTATACCATCGAGATCATGACCATAATCTGTTGGGACAGTTCCCTGAAGAGAGACCAGATATGTTATCTGTGGTTTTCATGTTGGGCAATGAAAGTATTGCACTTGCTCAACCAAAGAAGCCTGGTTTCTTCAAAGAAGAGTTAGAATTTCATGAGTACAATGAGATTGATTGTTCTAGCAATAATGCTATGACTATTACCCTATTGGAAGCTCGAAATTAG 4722 0.396 MRGSTILQICFFWTFTLSAFFVNTVLSADTLTATQSLGANQTLVSPQQVFEFGFFNTSISRWYLGIWYKDFPDKTVIWVANRDTPLENSNATLKIGDRGNLLLLNQTGNPIWSSNQTTSATNPVLQLFDTGNLILKEANEKDINNYLWQSFDDPTDTLLAGMKLGWNLDTGVERRITSWKSQDDPSIGDTYFSLNYHGIPDVFLWNKQQRVFRTGSWNGERFGGVPILNTIAPLNDTIVADKHQVYYLPSSLNQSSLSRLIVNWTGVIERYAWIESSQSWSKIWSAPDGDCDHYGVCGPFGICDSNSFPVCQCIQGFNVKNQGQWDLRNFSDGCTRKTELECGKDKFLHKTNVQLPDATKVFVDKNMTLLECRNMCQMNCSCTAYANAEITNGGTGCVMWTDNLIDMRQFSANGQDLYVKLAASDFNFFSDDSGTGSPGGSDKKNNAGMIVGIAVTVAIVILGVIIFILWKKRKLHSILRWNKKQDGNSERGQKTLLPEVIIHSINREHADERNMDDLELPLFDFNTITQATNYFSLANKLGEGGFGSVYMGRLVDGQEIAVKRLSTSSGQGNEEFKNEVRSIAKLQHRNLVRLFGCCIEKEEKMLIYEYMENKSLDSILFDTEKSSILDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNILLDREMNPKISDFGIARIFDSDQTQANTRRVVGTYGYMSPEYAMGGFFSVKSDVFSFGVLVLEIISGKKNRGFYSNDDINLLGHAWRLWKDGSALELIDPSFGDSYSKSEVVRCIHVGLICVQERAEDRPTMSTVALMLSSETSSLPEPKHPGFVLGRSSEETDSSSAKSHTINQVTVTRLDGRKLQKLLLGDMVQEYHTPNVWVANREKPLNDSSGNLTIGADGNILLVDGAGNRIWFTNSSRSIQEPIAKLLDSGNLVLMDGKNNDSFSYIWQSFDYPTDTMLPGMKLGWDKTSGMNRYLTSWKSANDPSPGSFTYSFDHKEFPELVIRQRMNITFRSGIWNGIRFNSDDWTSFTGITAFRPQLLVTNNEVVYWDEPGDRLSRFVLKDDGLLERYIWDNKVVQWIEMYEARKDFCDNYGACGSNGVCNINDVPVYCDCLKGFKPKSQEEWDSFNRSSGCIRRTPLNCTQGDRFQKLSRVKLPMLLQFWTNNGMSLGECEVECLKNCSCTAYANSAINEGPHGCLLWFGNLIDIRLLISKEDVQLDLYVRLAASEIDSTTNASKRRKMALIISASLALLLLCTIFYLSKKCTKWKSTTDLVAMAGHGNQNEDQTSPLFDIETILAATNNFSIENKIGEGGFGPLYRRKLAQGQEIAVKRLSKTPREGMSEFMNEVGLVAKLQHRNLVCVLGGCTQGEERMLVYEYMPNGSLNRFIFDPIRGKFLQWRKRYEIIVGIARGLLYLHQDSKLTIVHRDLKTSNILLDSELNPKISDFGMAHIFEGDHSAVTTKRIVGTVGYMSPEYARNGHLSLKSDVFSFGVIVLEILSGIRNNSLYHRDHDHNLLGQFPEERPDMLSVVFMLGNESIALAQPKKPGFFKEELEFHEYNEIDCSSNNAMTITLLEARN. 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05007 1573 Gene3D Phosphorylase Kinase; domain 1 1260 1372 - -
Seca6g05007 1573 Gene3D Phosphorylase Kinase; domain 1 499 610 - -
Seca6g05007 1573 Pfam Protein tyrosine and serine/threonine kinase 537 801 IPR001245 GO:0004672|GO:0006468
Seca6g05007 1573 CDD PAN_AP_plant 1131 1219 - -
Seca6g05007 1573 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Seca6g05007 1573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1373 1514 - -
Seca6g05007 1573 Gene3D Hepatocyte Growth Factor 341 422 - -
Seca6g05007 1573 Gene3D Transferase(Phosphotransferase) domain 1 611 815 - -
Seca6g05007 1573 Gene3D Transferase(Phosphotransferase) domain 1 1373 1539 - -
Seca6g05007 1573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1418 1430 IPR008271 GO:0004672|GO:0006468
Seca6g05007 1573 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Seca6g05007 1573 SMART serkin_6 1297 1544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05007 1573 SMART serkin_6 535 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05007 1573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 151 - -
Seca6g05007 1573 SMART ntp_6 342 421 IPR003609 -
Seca6g05007 1573 SMART ntp_6 1136 1218 IPR003609 -
Seca6g05007 1573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 813 - -
Seca6g05007 1573 ProSiteProfiles Bulb-type lectin domain profile. 828 940 IPR001480 -
Seca6g05007 1573 SUPERFAMILY Protein kinase-like (PK-like) 1281 1528 IPR011009 -
Seca6g05007 1573 Pfam PAN-like domain 1135 1201 IPR003609 -
Seca6g05007 1573 Pfam PAN-like domain 342 407 IPR003609 -
Seca6g05007 1573 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Seca6g05007 1573 ProSiteProfiles PAN/Apple domain profile. 1135 1219 IPR003609 -
Seca6g05007 1573 CDD B_lectin 34 154 IPR001480 -
Seca6g05007 1573 ProSiteProfiles Protein kinase domain profile. 1297 1573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05007 1573 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Seca6g05007 1573 CDD STKc_IRAK 541 805 - -
Seca6g05007 1573 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1259 1372 - -
Seca6g05007 1573 SUPERFAMILY Protein kinase-like (PK-like) 520 839 IPR011009 -
Seca6g05007 1573 CDD B_lectin 869 946 IPR001480 -
Seca6g05007 1573 ProSiteProfiles Protein kinase domain profile. 535 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05007 1573 Pfam Protein kinase domain 1298 1497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05007 1573 Pfam S-locus glycoprotein domain 1004 1114 IPR000858 GO:0048544
Seca6g05007 1573 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Seca6g05007 1573 SMART blect_4 34 154 IPR001480 -
Seca6g05007 1573 SMART blect_4 821 946 IPR001480 -
Seca6g05007 1573 Pfam Domain of unknown function (DUF3403) 807 850 IPR021820 GO:0004674
Seca6g05007 1573 Pfam D-mannose binding lectin 869 972 IPR001480 -
Seca6g05007 1573 Pfam D-mannose binding lectin 75 180 IPR001480 -
Seca6g05007 1573 Gene3D - 23 151 IPR036426 -
Seca6g05007 1573 Gene3D - 849 943 IPR036426 -
Seca6g05007 1573 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 796 - -
Seca6g05007 1573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 500 610 - -
Seca6g05007 1573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Seca6g05007 1573 SUPERFAMILY alpha-D-mannose-specific plant lectins 868 977 IPR036426 -
Seca6g05007 1573 CDD PAN_AP_plant 338 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05007 Seca-Chr6 117390270 117401417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05007 438 820 Receptor kinase-like Gene Family AT4G23190 54.872 9.24e-133 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05007 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05007 - - cave:132169979 1631.31