Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05006 ATGAGAGGCTTCAGCTTCACTAACCTCCTCCGTCTCTTCCTCTTTTGCTTCATCACTTCACACACTTTTTTCCCCACAATCTCATCCTCTGCAGACACCTTAACTGCATCACAATTTCTCAGAACCAATCAAACCCTTGAATCACCCAACCAAGTTTTCGTTCTGGGTTTCTTTCCCGGCACCAATTCCAATTGTTATTTGGGCATATGGTACAAGAACATGGCTGATAGAACAGTGGTTTGGGTCGCAAACAGAGACAACCCACTCGACAATTCCACGGGATTTCTCCAAATCGGGGACAGTGGAAACATAGTTCTTGTCAATTCACCAGGGAACCCCGTTTGGTCCTCGAATCAAACAACAGCAACCAACCCAATTGCTCAACTTTTGGACAGTGGGAATTTGGTTGTCAGAGAAGCAAACGGGAGTGACACCACAAAATATCTATGGCAGAGCTTCGATTACCCAACAGATACTCTGTTACCAGGCATGAAAATGGGTTGGAACTTGGACACAGGCACAGAGAAACACTTAACATCGTGGAGGGTCACAGGCCAAGACCCTTCAAAGGGTGATTATTCATTCAAGGTAGATTATCATGGACTACCAGAAATTTTCCTGCGGAACAGCCAGAACAATAAAATATATAGAAGTGGGCCTTGGAATGGTGATAGATTCAGTGGGGTACCAGAGATGGAACCCAATACGGATTCTATATTCTTTAATTTTTCTGTAGATGAACATGGGATATACTACTCATTCTATATTGGGAAAAATTACATTTTTTCAAGGCTTGTTGTGACATCGGATGGTCAACTTGAGCGCCTTACATGGGTACAGAGTAGCCAGACTTGGACAAAGTTTTGGTATGCACCTAAAGATCAGTGTGATGATTACAAGGAATGTGGTCCATATGGTAACTGTGACTCTAATGCTTCCCCGGTTTGCAAGTGTGTTGGAGGGTTCAGGCCTAAGAATCAGCAGGCATGGAATTTAAGAGATGGGTCTGATGGGTGTGTGAGGAACACAAATTTGGAGTGTGGGAGTGACAAGTTTTTGCATATGCAGAATGTGAAGTTGCCTGAGACCACCACTGTGTTTGTGAACAGGAGCATGGGCCTTGTGGAATGTGAAGGTCTGTGTCAGAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGATAACGAATGGAGGAAGTGGTTGTGTGATGTGGATTGGTGAACTCATGGACATAAGACAGTATCCTGATGGTGGCCAAGATCTCTATGTCAAATTAGCAGCTTCTGATGTTGGTACAAGTGGCTCTCACAAGACACATAATACAGCTAGAATTGTAGGAATTACAATTTCTGCAGTTGTTATAATTTTAGGATTGGGTATCATTTTATGCAATAAGAAGAGGAAATTGCGAAGTATATTGAATGGAGAAAAGAACATGGATGACCTAGAGCTGCCAATGTTTGATTTTAATACCATAACATTGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAGGGGCAGGTTGATGGAAGGCCAAGAAATTGCTGTCAAGAGGCTATCAAAAGACTCAGGTCAAGGAATTGAAGAATTCAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACACCGAAATCTTGTTCGGCTACTTGGTTGTTGTATTGAGAAGGATGAGAAGCTGTTGGTGTATGAGTACATGGAAAATAGAAGCCTTGATTCCATTTTGTTTGACAAGACCAGAAAACCCTTACTGGACTGGAAAATGCGCTTCAACATCATATGTGGAATAGCAAGAGGTCTTCTTTACCTACATCATGATTCCAGACTCAGGATTATCCATAGGGATCTTAAGGCAAGCAACATTCTACTTGACAGTGAAATGAACCCAAAAATATCAGACTTTGGGATGGCTAGAATTTTTGGCACAAATCAGACAGAAGCAAATACTTTGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTTGTGCTGGAGATCATAAGTGGAAAGAAAAATAGAGGATTCTATTACTCAAACGATGATATGAATCTTTTAAAGAATGCATGGACGCAATGGAGAGAAGGCAGTGCATTGGAACTCATTGATTCATCAATTGGTGATTCATACTCAGCATCTGAAGTTCTTAGATGCATACATGTTGGACTCTTGTGTGTTCAAGAACGTGCGGAAGATAGGCCAATAATGTCTTCAGTGATCTTAATGTTGAATAGTGAAACTGCATTGATGCCACAACCCAAAAGCCCTGGGTTTTCCCTAGGAAGAAATCATGTGGAGACTGATTCTTCTTCAAGTAAGCATGATGAATCATGGAGTGTGAACCAAGTCACAGTCACACTGCTAAATGCTAGATATTTTTTCACCACAACCACACTCTCTGCAGATACCTTAGCTGCATCACAAATTCTCAGAACCAACCAAACCCTTGAATCAGCCAACGAAGTTTTCGTTCTGGGCTTCTTTTCCGGCAGCGATTCCAAGTGGTATTTGGGCATATGGTACAAAAACATGGCTGATAGAACAGTGGTTTGGGTGGCAAACAGAGACAACCCAGTTGACAACTCCACAGGATTTCTCCAGATAGGAGACAGTGGAAACATGGTTCTTGTCAATTCATCTGGGACCCCCGTTTGGTCCTCGAATCAAACAACAGCTAGAAACCCAGTTATTCAACTTTTGGACAGTGGGAATTTAGTTGTCAGAGAAGCAAACAGGGGTGACACCACAAAATATCTATGGCAGAGCTTCGATTACCCAACAGATACTTTGTTACCAGGCATGGAGATCATCTGGAAGTTGGACACGGGCTCGGAGAGACACATAACGTCGTGGAGAATCACAGGCCAAGACCCTTCAACCGGAGATTATTCAGTCAAGATAGATTATCATGGTCTACCAGAAATTTTCCTGCGGAAAAACCAGAAGAATATAATATATAGAAGTGGGCATTGGAATGGTGTGAGATTCAGCGGGGTACCAGAGATGGAACCCAATACTGATTATATTGTTTTTAATCTTTCAGCAGATGAAAATGGGGAATACTATTACTCATTCTCCATGGGGAATCCCTCTGTCTTTTCAAGGACCATTGTGACCTCGGATGGTGAATTTGAGCGCCTTATATGGCTACAAAGCAGCCAGAGTTGGACCACGTTTTGGTATGCACCTAAAGATGATTGTGATCATTACAAAACATGTGGTCCATATGGTATATGTGACTCTAATTCTTGGCCCCTTTGTAAGTGTATTGAAGGGTTTAGGCCTAAGAATCAGCAGGCATGGAATTTGAGAAATGGGTCTGATGGGTGTGTGAGGAAGACAAATTTGGAGTGTGGGAGTGACAAGTTTTTGCCTCTGCAGAAGGTGAAGTTGCCTGAGACAAGCAAGGTATTTGTGAACAGGAGCATGAGTCTGGTGGAATGTGAAGGTTTGTGCCAGAGGAATTGTTCATGCACCGCTTATGCCAACATTGATATAAGGAATGGGGGAAGTGGGTGTGTGATGTGGATTGGTGAACTCATAGACATAAAGCAGTATCCTGGTGGTGGCCAAGATCTATACGTGAGATTAGCAGCTTCTGATGTTGGATCTGCAAGTGGCTCTCACAATACAAATGACAGAGCTAAGGTTGTAGGAATTACAATTTCTGCGGCTGTTATAATTCTGGGATTGTGTATCATTTTATGTAAGAAGAGAAAATTGCTGAGTATAGAAAACTTAGGAGAAAAGAACATGGATGACCTAGAGTTGCCAATGTTTGATTTTAATACCATAACATTGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACGAGGAGGCTTTGGTAGTGTTTACAGGGGCAGGTTGATGGAAGGCCAAGAAATTGCTGTCAAGAGGCTGTCAAAAGACTCGGGCCAAGGAGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTGAAGCTCCAACATAGAAATCTTGTTCGACTCTTTGGTTGCTGCATTGAGAAGGGTGAGAAGATGTTGGTGTATGAGTACATGGAAAATAGAAGCCTTGATTCCATTTTGTTTGACAAGGCAAAAAAACCCTTACTAGATTGGAAAACGCGTTTCAACATTATATGTGGAATTGCTAGAGGGCTTCTTTATCTACACCATGATTCGAGACTCAAAATTATACATAGGGATCTCAAGGCAAGCAACATTCTACTTGACTGTGAAATGAACCCAAAAATATCAGACTTTGGGATAGCTAGAATTTTTGGCACAAATCAAACAGAAGCAAATACTTTGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAGTATGCTATGGATGGGAACTTCTCAGTGAAATCTGATGTTTTTAGCTTTGGGGTTATTATGTTAGAGATCATAAGTGGAAAGAAAAATAGAGGATTCTATTACTCAAACGATGATATGAATCTTCTAAGGAATGCATGGGGGCAGTGGAGAGAAGGAAGACCCTTGGATCTCATTGATTCATCAATTGGCGATTCATATTCACCATCTGAAGTAATTAGATGCATACATGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATCTTGATGTTAAGCAGTGAAACTGCATCAATGCCACAACCAAAAAGCCCTGGATTTTCGCTTGGAAAGAACCCCGGGGAGACAGATTCATCTTCAAGTAAGCAAGATAAATCATGGAGTGTGAACCAGGTCACAATCACATTGCTAGATGCTAGATAA 4860 0.4152 MRGFSFTNLLRLFLFCFITSHTFFPTISSSADTLTASQFLRTNQTLESPNQVFVLGFFPGTNSNCYLGIWYKNMADRTVVWVANRDNPLDNSTGFLQIGDSGNIVLVNSPGNPVWSSNQTTATNPIAQLLDSGNLVVREANGSDTTKYLWQSFDYPTDTLLPGMKMGWNLDTGTEKHLTSWRVTGQDPSKGDYSFKVDYHGLPEIFLRNSQNNKIYRSGPWNGDRFSGVPEMEPNTDSIFFNFSVDEHGIYYSFYIGKNYIFSRLVVTSDGQLERLTWVQSSQTWTKFWYAPKDQCDDYKECGPYGNCDSNASPVCKCVGGFRPKNQQAWNLRDGSDGCVRNTNLECGSDKFLHMQNVKLPETTTVFVNRSMGLVECEGLCQRNCSCTAYANIEITNGGSGCVMWIGELMDIRQYPDGGQDLYVKLAASDVGTSGSHKTHNTARIVGITISAVVIILGLGIILCNKKRKLRSILNGEKNMDDLELPMFDFNTITLATNNFSEANKLGQGGFGSVYRGRLMEGQEIAVKRLSKDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKLLVYEYMENRSLDSILFDKTRKPLLDWKMRFNIICGIARGLLYLHHDSRLRIIHRDLKASNILLDSEMNPKISDFGMARIFGTNQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYSNDDMNLLKNAWTQWREGSALELIDSSIGDSYSASEVLRCIHVGLLCVQERAEDRPIMSSVILMLNSETALMPQPKSPGFSLGRNHVETDSSSSKHDESWSVNQVTVTLLNARYFFTTTTLSADTLAASQILRTNQTLESANEVFVLGFFSGSDSKWYLGIWYKNMADRTVVWVANRDNPVDNSTGFLQIGDSGNMVLVNSSGTPVWSSNQTTARNPVIQLLDSGNLVVREANRGDTTKYLWQSFDYPTDTLLPGMEIIWKLDTGSERHITSWRITGQDPSTGDYSVKIDYHGLPEIFLRKNQKNIIYRSGHWNGVRFSGVPEMEPNTDYIVFNLSADENGEYYYSFSMGNPSVFSRTIVTSDGEFERLIWLQSSQSWTTFWYAPKDDCDHYKTCGPYGICDSNSWPLCKCIEGFRPKNQQAWNLRNGSDGCVRKTNLECGSDKFLPLQKVKLPETSKVFVNRSMSLVECEGLCQRNCSCTAYANIDIRNGGSGCVMWIGELIDIKQYPGGGQDLYVRLAASDVGSASGSHNTNDRAKVVGITISAAVIILGLCIILCKKRKLLSIENLGEKNMDDLELPMFDFNTITLATNNFSEANKLGRGGFGSVYRGRLMEGQEIAVKRLSKDSGQGVEEFKNEVKLIVKLQHRNLVRLFGCCIEKGEKMLVYEYMENRSLDSILFDKAKKPLLDWKTRFNIICGIARGLLYLHHDSRLKIIHRDLKASNILLDCEMNPKISDFGIARIFGTNQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVIMLEIISGKKNRGFYYSNDDMNLLRNAWGQWREGRPLDLIDSSIGDSYSPSEVIRCIHVGLLCVQERAEDRPTMSSVILMLSSETASMPQPKSPGFSLGKNPGETDSSSSKQDKSWSVNQVTITLLDAR. 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05006 1619 MobiDBLite consensus disorder prediction 1576 1606 - -
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Seca6g05006 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Seca6g05006 1619 Gene3D Transferase(Phosphotransferase) domain 1 576 780 - -
Seca6g05006 1619 Gene3D Transferase(Phosphotransferase) domain 1 1376 1582 - -
Seca6g05006 1619 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 761 - -
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1376 1579 - -
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 153 - -
Seca6g05006 1619 Gene3D Phosphorylase Kinase; domain 1 475 575 - -
Seca6g05006 1619 Gene3D Phosphorylase Kinase; domain 1 1275 1375 - -
Seca6g05006 1619 Gene3D - 26 153 IPR036426 -
Seca6g05006 1619 Gene3D - 824 951 IPR036426 -
Seca6g05006 1619 ProSiteProfiles Protein kinase domain profile. 1300 1586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05006 1619 CDD PAN_AP_plant 1142 1226 - -
Seca6g05006 1619 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 222 IPR036426 -
Seca6g05006 1619 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Seca6g05006 1619 CDD B_lectin 37 156 IPR001480 -
Seca6g05006 1619 ProSiteProfiles Bulb-type lectin domain profile. 829 948 IPR001480 -
Seca6g05006 1619 Pfam Domain of unknown function (DUF3403) 1573 1619 IPR021820 GO:0004674
Seca6g05006 1619 Pfam Domain of unknown function (DUF3403) 773 819 IPR021820 GO:0004674
Seca6g05006 1619 CDD STKc_IRAK 506 772 - -
Seca6g05006 1619 SMART serkin_6 1300 1569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05006 1619 SMART serkin_6 500 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05006 1619 Pfam D-mannose binding lectin 876 980 IPR001480 -
Seca6g05006 1619 Pfam D-mannose binding lectin 78 182 IPR001480 -
Seca6g05006 1619 CDD STKc_IRAK 1306 1571 - -
Seca6g05006 1619 Pfam PAN-like domain 1146 1211 IPR003609 -
Seca6g05006 1619 Pfam PAN-like domain 347 412 IPR003609 -
Seca6g05006 1619 ProSiteProfiles PAN/Apple domain profile. 1146 1226 IPR003609 -
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1265 1375 - -
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 575 - -
Seca6g05006 1619 SUPERFAMILY Protein kinase-like (PK-like) 1283 1571 IPR011009 -
Seca6g05006 1619 ProSiteProfiles Bulb-type lectin domain profile. 31 150 IPR001480 -
Seca6g05006 1619 CDD B_lectin 835 954 IPR001480 -
Seca6g05006 1619 SMART blect_4 37 156 IPR001480 -
Seca6g05006 1619 SMART blect_4 835 954 IPR001480 -
Seca6g05006 1619 SMART ntp_6 347 426 IPR003609 -
Seca6g05006 1619 SMART ntp_6 1146 1225 IPR003609 -
Seca6g05006 1619 CDD PAN_AP_plant 343 427 - -
Seca6g05006 1619 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Seca6g05006 1619 Pfam Protein tyrosine and serine/threonine kinase 503 766 IPR001245 GO:0004672|GO:0006468
Seca6g05006 1619 Pfam Protein tyrosine and serine/threonine kinase 1303 1568 IPR001245 GO:0004672|GO:0006468
Seca6g05006 1619 SUPERFAMILY Protein kinase-like (PK-like) 485 800 IPR011009 -
Seca6g05006 1619 Pfam S-locus glycoprotein domain 1014 1125 IPR000858 GO:0048544
Seca6g05006 1619 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Seca6g05006 1619 SUPERFAMILY alpha-D-mannose-specific plant lectins 863 1020 IPR036426 -
Seca6g05006 1619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1421 1433 IPR008271 GO:0004672|GO:0006468
Seca6g05006 1619 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05006 1619 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 825 951 - -
Seca6g05006 1619 ProSitePatterns Protein kinases ATP-binding region signature. 1306 1328 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05006 Seca-Chr6 117367013 117390757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05006 488 819 Receptor kinase-like Gene Family AT4G11530 59.941 5.67e-131 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05006 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05006 - - cave:132169979 1848.17