Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05004 ATGATCTCAACATACCAACGCTTAACTTCTGCTCTTTTCTTCTCTTTGCTCTGTTTCTTTCCTGTCTTCTCACGTGCTTCCACTTCCAGGGTCAGAATCACCTATGGTGATTTGATCAGAGACAGGGAAGGTGAAATTTTGGTGTCTGATGGCTTCAACTTCGTCATGGGTTTCTTCACTTTGGATAACTCCTCTTCTCGTTACGTTGGGATTTGGTACTACAACATTCCTGGACCTGCAGTCATATGGGTTGCAAACAGAGACAAACCCCTCAAAGACACTGGGGGTTCTATCACTATAGGAAGGGATGGCAATTTGGTTATCCTTGATGGAGACAAGAATAAAGTCTGGTCCAGTAATGTTTCCATTCCCAACAACAAAAACAACTCTCAAGCTGTGCTTCGTGATGATGGCAATCTTGTTCTTTCAAGTCATGGGAAAGAGGTGTGGCAAAGCTTTGAAAACCCCACTGATACATATGTTCCTGGTATCAAAGTGCCGGTGAAAGCTGCATCTGGGAAGAGCTTTGCCTTCACTTCATGGAAATCCGCCACGGATCCTTCACCGGGAAACTACACCATGGGGGTTGATCCTGAGGGGTTACCTCAGATATTGGTTTGGGAGGGACAGAACAGGAGGTGGAGAAGTGGGTATTGGGATGGTAGAATATTTACTGGGGTAGATATGACAGGAAGTATTCTCTATGGCTTTACACTTAACATGGATGGTGAAGGAGGCAGGTACTTCACATATGAGCCTTTCAACGACACTAAGGTAAGGTTTCAGATAGGATGGGATGGGTATGAGCGGGAGTTTGGTTGGAATGAAGGTGAGAAGCATTGGAATGAGATACAAAAAGGGCCTTCGAATGAGTGTGAGGTTTATAACAAGTGTGGTAGCTTTGCAGCATGTGATTTGTCCACTTCAGGTTCAGCTATTTGTAGTTGTATAAGAGGGTTTGAACCAAAGCATAGTGATCAGTGGCATAAGGGGAACTTCTCAGGTGGGTGTCAGAGGATGACTCCACTCAAGGCTGAGAGAAATGCTAGTTCTGGAACTGAGGTGATTGTTGAAGAAGATGGTTTCTTGGTGCGTAGGTGTATGAAGTTGCCGGACTTTGCACGTGTGGTTAGCACAGAGGATTGTAAGAACAATTGTTTAAAGAATGCTTCTTGTACTGCATATGCAAATGTGCTTGGAATTGGATGCATGGCTTGGTATGGGGAGTTGGTTGATATTCAACAATTTGAACGTGGAGGAAATACACTTTACATCCGCCTAGCTGATTCTGATTTAGGTGATGGAGGAAAAAAGAACAAGATTGTGATAATATCAACTGTTGTGGGAGGGTTAATCTGCCTAGGAATCATTGTTTGGGTGGTCTGGAGGTTCAAAGGAAAACTCAAAGCTTTGCCCACAGTTTCCTCAGCTTCATGTTGCAAGAATAGTGATGTACTACCAGTTTTTGATGCAACCAAGAGCAGAGAAGTGTCAGCAGAATTTTCAGGATCAGCTGACCTTAGTTTGGAAGGGAATCAACTAAGCGGACCAGAACTTCCATTTTTCAATTTTAGTTGCATGTCAATAGCCACAAACAACTTTTCAGAAGAAAATAAACTTGGACAAGGGGGATTCGGTCCTGTCTACAAGGGAAAGCTTCCAAGCGGAGAAGAAATAGCTGTCAAGAGGCTTTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAACATAGAAATCTTGTTAGACTAATGGGTTGTTCTATTCAAGGGGAAGAAAAGTTGCTGGTATATGAATTCATGCCTAACAAAAGCTTGGATTGCTTTTTATTTGATCCAATCAAGCAAGCCCAATTAGACTGGACAAGACGCTTTGAAATCATTGAAGGCATTGCAAGAGGACTGCTTTATCTGCATCGGGATTCAAGGCTAAGAATAATTCATCGAGATCTAAAAGCAAGCAACATTTTGTTAGATGAAAACATGAACCCAAAAATATCAGACTTTGGTTTGGCTCGGATATTTGGTGGAAACCAGAATGAAGCCAATACAACCAGAGTGGTTGGTACATATGGTTATATGTCCCCTGAATATGCAATGGAAGGTCTGTTTTCAGTCAAATCAGATGTATATAGTTTTGGTATCTTACTGCTAGAGATTTTGAGTGGCCGCAGGAACACTAGCTTTCGTCACTCAGATGACTCAAGTCTCATAGGATATGCGTGGCATCTTTGGAATGAACGCAGAGCAATGGAGCTTATTGATCCTTGCATTCGTGATTCAAGTCCTAAAAACAAAGCTTTGAGGTGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCATAGACCAAACATGTCCACTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCTTTGCCTACGCAACCTTTGGTTACTTCTATGAGGAGATATGAGGACAGAGAATTTTATATGGATGGCCTTGATGTTTCAAATGATCTTACAGTCACAATGGTGGTAGGGAGATAG 2550 0.4251 MISTYQRLTSALFFSLLCFFPVFSRASTSRVRITYGDLIRDREGEILVSDGFNFVMGFFTLDNSSSRYVGIWYYNIPGPAVIWVANRDKPLKDTGGSITIGRDGNLVILDGDKNKVWSSNVSIPNNKNNSQAVLRDDGNLVLSSHGKEVWQSFENPTDTYVPGIKVPVKAASGKSFAFTSWKSATDPSPGNYTMGVDPEGLPQILVWEGQNRRWRSGYWDGRIFTGVDMTGSILYGFTLNMDGEGGRYFTYEPFNDTKVRFQIGWDGYEREFGWNEGEKHWNEIQKGPSNECEVYNKCGSFAACDLSTSGSAICSCIRGFEPKHSDQWHKGNFSGGCQRMTPLKAERNASSGTEVIVEEDGFLVRRCMKLPDFARVVSTEDCKNNCLKNASCTAYANVLGIGCMAWYGELVDIQQFERGGNTLYIRLADSDLGDGGKKNKIVIISTVVGGLICLGIIVWVVWRFKGKLKALPTVSSASCCKNSDVLPVFDATKSREVSAEFSGSADLSLEGNQLSGPELPFFNFSCMSIATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEFMPNKSLDCFLFDPIKQAQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTTRVVGTYGYMSPEYAMEGLFSVKSDVYSFGILLLEILSGRRNTSFRHSDDSSLIGYAWHLWNERRAMELIDPCIRDSSPKNKALRCIHIGMLCVQDSAAHRPNMSTVVLMLESEATTLPLPTQPLVTSMRRYEDREFYMDGLDVSNDLTVTMVVGR. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05004 849 SMART serkin_6 534 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05004 849 Pfam Protein tyrosine and serine/threonine kinase 537 802 IPR001245 GO:0004672|GO:0006468
Seca6g05004 849 Gene3D Phosphorylase Kinase; domain 1 510 609 - -
Seca6g05004 849 CDD B_lectin 44 156 IPR001480 -
Seca6g05004 849 PIRSF SRK 3 849 IPR024171 GO:0004674
Seca6g05004 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 610 812 - -
Seca6g05004 849 SMART blect_4 38 156 IPR001480 -
Seca6g05004 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Seca6g05004 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 795 - -
Seca6g05004 849 Gene3D - 32 153 IPR036426 -
Seca6g05004 849 SMART ntp_6 357 427 IPR003609 -
Seca6g05004 849 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Seca6g05004 849 Gene3D Transferase(Phosphotransferase) domain 1 610 812 - -
Seca6g05004 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 221 IPR036426 -
Seca6g05004 849 CDD STKc_IRAK 540 805 - -
Seca6g05004 849 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Seca6g05004 849 CDD PAN_AP_plant 359 428 - -
Seca6g05004 849 ProSiteProfiles Bulb-type lectin domain profile. 32 155 IPR001480 -
Seca6g05004 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 499 609 - -
Seca6g05004 849 Pfam D-mannose binding lectin 81 182 IPR001480 -
Seca6g05004 849 SUPERFAMILY Protein kinase-like (PK-like) 519 830 IPR011009 -
Seca6g05004 849 ProSiteProfiles Protein kinase domain profile. 534 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05004 849 ProSiteProfiles PAN/Apple domain profile. 357 428 IPR003609 -
Seca6g05004 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 153 - -
Seca6g05004 849 Pfam PAN-like domain 358 413 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05004 Seca-Chr6 117351963 117356340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05004 435 817 Receptor kinase-like Gene Family AT4G23230 52.865 1.94e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05004 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05004 - - gmx:102660295 1382.85