Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05002 ATGGTTATGGGGTTCACTCAGTTTAAGTTTAGAGGTTTACCCGTTTTGCTAATACTTTTCTATCTGTCCATTCATGTATGGCTATGCACTTCACTTGATACCATCTCATCATCCCATTTCCTCAACTACTCTGAAACTTTAAGCTCCAGTAACGGTTTCTTCCACCTTGGATTCTTCACCCCTCAAAACTCAACCTTTTCATACCTGGGAATTTGGTATATGTCCAACCCCCCTGTAGTATGGGTAGCTAATAGAGACAAGCCACTGAATGATTCTTCTGGGACAGTCAAAATATCTGAGGATGGAAATCTTGTTCTGATGAATGGAAAAAAAGAAATCCTTTGGTCAACAAATGTGTCCAACATTGCATCTAACACAACAGCTCTGCTTCTGGACACTGGCAATCTTGTGCTGCAAGAAAGTGCTACAAGAAAGATGGTATGGCAGAGTTTCCAACATCCTTGCAATACATTGTTGGATAAAATGAAACTTGTTTCGAATAAAACTAGAATGAAAATAACCTCATGGAAAAGTCCTCAGGATCCATCCATTGGAAACTTCTCTCTAAGTCTTGAACACCTAGAGATTCCTGAAGTTTTCACCTGGAGAGGAAGTCAACTATACTGGCGAAGTGGTCCATGGAATGGTCAGATCTTTCTTGGGACACCAGACATGAGCAATAATTATCTTGATGGATTTTACTTAGGTGGGAAAGGTGAAGGGGGTGACAATTATTATCTCACTTATACATCTGCAAATCAGTCTCAATTGATAATGTTTGTATTGAGTACTGAAGGAGGTATAGACCAATTATATTGGGATTATGAAAGGAGACATTGGTCAATCATGTGGTCAGTTCCAAAATCTGAGTGTGATCTTTATGGCATATGTGGAGCATTTGGAAGCTGTGACTCTACAAGTTCTCCTATCTGCAGCTGTTTGAAAGGATTTGAGCCAAGGAATCCAGAGGAATGGAAGAGACAGAATTGGACTAGTGGATGTGTTAGGAAGGAACCACTGCAGTGTGAGAGAGTAAAAAATAGGAGTGAAGCTCAAGCTAACAATAGGGATGGGTTTCTGAAGCTGCAGAATACCAAAGTTCCAGACTTTGTCCAATGGTCATCTTCTCTTTATGATGATTGTAGAACTCAGTGCTTGCAAAACTGCTCTTGTTTAGCATATGCGTATGATGCAGGCATTGGCTGTATGTTATGGAGTGCAGACTTGATTGACATACAAAGGTTCTCAGCTGGAGGAACTGATCTTTACATTCGGGTTCCCTATTCTGAACTTGTAACAGATGAAAAGAAGAAAAATTCCACAGTGATCATTGCAGTTACAGTCACAATAGGAACAATTATCATTTTGACATGTGGATTTGTCTTGTGGAAAAGGAATACAAAAAGTGAGAAAATAAATCTGAAAATTCAGAGTCACAGAAGCCAGGTAAATGACCCTAGTAAATTTAAACTCCCGGAGCTTTCCCAATTTGAATTTGAAAAGCTTGCTACTGCAACAAACAACTTTCACGTAAATAATAAGCTAGGGCAAGGTGGTTTTGGACCAGTATACAAGGGTACATTGGAAGATGGACAGGAAATAGCTGTTAAAAGACTTTCAAGAACATCTGGACAAGGGCTAGAAGAATTTATGAATGAGGTTTTGGTAATATCAAAGCTTCAACATCGTAACCTTGTCAGACTTCTTGGATGTTGCATTGAAGGAGATGAAAAGATTTTGATCTATGAGTACATGCCACACAGAAGTTTGGATGCATATATGTTTGATCCATTTAAACAGGTACTGAATTGGGAAAAACGTTTTTATATAATTGAAGGAATTGCCCGGGGTCTACTTTACCTTCATAGAGACTCAAGACTCAGAATTATCCATAGGGACCTCAAGTTAAGTAATATATTGCTGGATGAAGAGCTGAATCCAAAAATATCAGATTTTGGTATGGCAAGAATTTTTGGTCACAGTGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGTTATTTGTCTCCAGAATATGCCATGGAAGGGCTATTTTCAGAGAAGTCTGATGTCTTCAGCTTTGGTGTTTTACTGCTGGAGATTGTCAGCAGGAGGAAAAATACCAGCTTTTATAAGGATGCTGAAACTTTGAGCCTTTTAGGATTTGCATGGAAATTGTGGAATGAGGACAACATCACATCTCTAATAGATCCAGAAATATCAAATCAAAGCTTCCATGCAGATATTATTAGATGCATACATATTGGCCTTCTGTGTGTGCAGGAACTTGCAAGAGACAGGCCTACAATGACTACAGTAATTTCAATGCTTAGCAATGAGACTGTTTACCTTCCCACCCCAAGACGGCCAGCATTCATTCAAAGGCAGACCATGTTGGATGTAGAGTGCTCTCCTAAAAATGATGTATTGTGCTCAATCAATTATGTCAGTGTAACAAATTTTGAAGGAAGGTAG 2481 0.3906 MVMGFTQFKFRGLPVLLILFYLSIHVWLCTSLDTISSSHFLNYSETLSSSNGFFHLGFFTPQNSTFSYLGIWYMSNPPVVWVANRDKPLNDSSGTVKISEDGNLVLMNGKKEILWSTNVSNIASNTTALLLDTGNLVLQESATRKMVWQSFQHPCNTLLDKMKLVSNKTRMKITSWKSPQDPSIGNFSLSLEHLEIPEVFTWRGSQLYWRSGPWNGQIFLGTPDMSNNYLDGFYLGGKGEGGDNYYLTYTSANQSQLIMFVLSTEGGIDQLYWDYERRHWSIMWSVPKSECDLYGICGAFGSCDSTSSPICSCLKGFEPRNPEEWKRQNWTSGCVRKEPLQCERVKNRSEAQANNRDGFLKLQNTKVPDFVQWSSSLYDDCRTQCLQNCSCLAYAYDAGIGCMLWSADLIDIQRFSAGGTDLYIRVPYSELVTDEKKKNSTVIIAVTVTIGTIIILTCGFVLWKRNTKSEKINLKIQSHRSQVNDPSKFKLPELSQFEFEKLATATNNFHVNNKLGQGGFGPVYKGTLEDGQEIAVKRLSRTSGQGLEEFMNEVLVISKLQHRNLVRLLGCCIEGDEKILIYEYMPHRSLDAYMFDPFKQVLNWEKRFYIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDEELNPKISDFGMARIFGHSEDEANTRRVVGTYGYLSPEYAMEGLFSEKSDVFSFGVLLLEIVSRRKNTSFYKDAETLSLLGFAWKLWNEDNITSLIDPEISNQSFHADIIRCIHIGLLCVQELARDRPTMTTVISMLSNETVYLPTPRRPAFIQRQTMLDVECSPKNDVLCSINYVSVTNFEGR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05002 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 216 IPR036426 -
Seca6g05002 826 Pfam S-locus glycoprotein domain 209 320 IPR000858 GO:0048544
Seca6g05002 826 CDD STKc_IRAK 515 779 - -
Seca6g05002 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Seca6g05002 826 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Seca6g05002 826 ProSiteProfiles PAN/Apple domain profile. 342 427 IPR003609 -
Seca6g05002 826 SMART serkin_6 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05002 826 ProSiteProfiles Bulb-type lectin domain profile. 32 151 IPR001480 -
Seca6g05002 826 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05002 826 Gene3D Transferase(Phosphotransferase) domain 1 585 785 - -
Seca6g05002 826 SMART blect_4 38 154 IPR001480 -
Seca6g05002 826 Pfam D-mannose binding lectin 79 177 IPR001480 -
Seca6g05002 826 Pfam Protein tyrosine and serine/threonine kinase 510 778 IPR001245 GO:0004672|GO:0006468
Seca6g05002 826 Gene3D - 27 152 IPR036426 -
Seca6g05002 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 787 - -
Seca6g05002 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 769 - -
Seca6g05002 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 151 - -
Seca6g05002 826 SMART ntp_6 354 426 IPR003609 -
Seca6g05002 826 Pfam PAN-like domain 354 412 IPR003609 -
Seca6g05002 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Seca6g05002 826 SUPERFAMILY Protein kinase-like (PK-like) 492 779 IPR011009 -
Seca6g05002 826 Gene3D Phosphorylase Kinase; domain 1 468 584 - -
Seca6g05002 826 PIRSF SRK 7 826 IPR024171 GO:0004674
Seca6g05002 826 CDD B_lectin 38 154 IPR001480 -
Seca6g05002 826 CDD PAN_AP_plant 339 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05002 Seca-Chr6 117334086 117337621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05002 436 802 Receptor kinase-like Gene Family AT4G05200 51.344 2.01e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05002 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05002 - - adu:107468469 1125.15