Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05001 ATGTTACTGTTCTCCCAACTACATTCTATAATGATATGGCTCCATTACATTTATTCATTAGTGAATGAATCCATTAGTGCAGCCACCAACGTTATGGGGATGGGATTCAGTGTTCTAGGAATTCTTTTTCTCACTCTCCCAACCTTTTACATACATTATGTCACTGCCTTAGACACCATTACAGCATCTCAATTCATCAAAGATCCTCAAACTATAAGCTCTAAGGACGACGCATTCAAGCTAGGATTCTTCAACCCTCCCAACACAACAAATCGCTACGTAGGAATCTGGTACCTCTCTCAGTCCAACGTCATATGGGTGGCCAACAGAGACCAACCACTACACGACTCTTCCGGGATTGTCACCATATCTCACGACAAAAACCTTGTAGTACTGAATGGGACAAAACATGTTATTTGGTCATCAAATGTCTCAACTTTTGTTGCATCCAATTCCACTGCCCAACTTCTAGATACTGGGAACCTTGTATTGGTGGATGACACAACAGGCAAGACAATATGGGAGAGTTTCAAACATCCCTCTGATACATTCCTTCCAAATATGATAATTAGCACCAACCAAAAAACAGGGGAGAAAGTAAAAGCTACTTCATGGAAAAGTCCTTCTGATCCAGCCATTGGAAACTTCTCTGGCAGCCTTGACCGTCTCAGTGCTCCTGAAGTCTTTGTTTGGAAACAATCACAACCGTTCTGGCGCTCAGGTCCATGGAACGGTCAAGTCTTTATTGGTTTAGCCAGCAATTTGATGTATACTTCTGCATATCTGAATGGATTCAGCATAGGAAGGGGAGAGAATGACACTGTTGAGATAACTTACACTCTGCCAAATAACTCTTTCTTTGGAACCATTGTTGTGAGTCCAGAAGGCAAGCTGGTGTACACTGCCTGGATCAACAGGTTTCTAGTTGGTAAACGCGTATTTCAGGAAAATGATTGTGATGTTTATGGCTTTTGTGGGCCTTATGGAAGCTGTGATTCCAACAATTCACCAATCTGCACCTGTTTGAGAGGTTTTGAGCCGAGAAACGTGGATGAATGGAATAGACAAAACTGGACAAGTGGTTGTGTGAGAAAGGATGCACTGCAGTGTGAGAGGGTGAAAAATGGAAGTGAAGCTGGTGAAGGAGATGGATTTTTGAAACTGCAGATGACAAAAGTACCAGACTTTGCACAACAGTCATATCTTTCAGTTGATGCGTGTAGAACTGAGTGCCTCAAGAATTGTTCTTGTACAGCTTATGCATATGATGATGGCATTGGCTGTTTGAGTTGGAGTGGGAAGTTAATTGACATAGTGAGGTTCTCAAGTGGAGGAGTTGATCTTTACATACGCCAACCTCATTCAGAATTACTTGATGTAGATGGGAAAAGAAACGTTACAGCAATCATCATAGTTTCAGTGATAGTTGGAGCAGTTATTGTTGCTACCTGTACATATTTCTTATGGTCATGGACTTCTAAACGTACAGTGAGAAGAAAGGAAAGGCAAGGTTCGTTAGTGTTGAACACAGGGGAAACACATCTGGAAAACCGAAGTGTAGGTCTAATTGGAGATGTGAAACAAGTCAAAATTGAGGACCTTCCTTTATTTGATTTTAGAATCATTGCAACTTCAACAAATAACTTTGATTCAGCTAATAAGCTCGGCCAGGGTGGTTTTGGTTCAGTATATAAGGGAGAATTGCAAGATGGACAAGAAGTAGCAGTGAAAAGACTTTCAAGAGCTTCTGGACAGGGGATAGAAGAGTTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACACCGCAATCTTGTGAGACTTCTAGGCTGCTGCATCGAAGGGGAAGAAAAGATGTTGATCTATGAGTACATGCCTAATAACAGCTTAGATTTTTATCTATTTGACCAAGTCAAAAAGAAGGTTTTAGATTGGCAAAAACGGTTAAACATAATTGAAGGAATCTCTAGAGGTCTTCTTTATCTCCATAGAGATTCCAGATTAAGAATAATCCATAGAGACCTGAAGCCAAGTAATATCTTGCTGGATGGAGAACTGAATCCAAAAATATCTGACTTTGGTATGGCAAGAATCTTTGGAGGCAGTGAAAATGAGGCCAACACTAGAAGGATTGTGGGAACATATGGGTACATGTCCCCTGAATATGCCATGGAAGGGCTGTTTTCAGAGAAATCTGATGTTTTTAGCTTTGGAGTTTTGCTTCTGGAGATAATTAGTGGTAGGAAAAACACAAGTTTCTATAAACACGAGCAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGATTGTATCTTTGATAGATCCAGATATATCTAATCCGGATTGTGTTGATCACATTTTGAGATGCATACACATTGGACTTCTTTCTGTCCAAGAATTTGCAAAGGAGAGGCCTACTATGGCCACCATCGTTTCTATGCTTAATAGTGAGATTGTTAATTTTCCTGCTCCACGGCAACCCGCATTCACCCAAAGACAGATTGAGCAGAGCGGTGATTCATCTCAACTGAGTCATGATTCAAATTCCATCAACAATGTTACTGTCACAAACTTGCAAGGCAGATAG 2604 0.4071 MLLFSQLHSIMIWLHYIYSLVNESISAATNVMGMGFSVLGILFLTLPTFYIHYVTALDTITASQFIKDPQTISSKDDAFKLGFFNPPNTTNRYVGIWYLSQSNVIWVANRDQPLHDSSGIVTISHDKNLVVLNGTKHVIWSSNVSTFVASNSTAQLLDTGNLVLVDDTTGKTIWESFKHPSDTFLPNMIISTNQKTGEKVKATSWKSPSDPAIGNFSGSLDRLSAPEVFVWKQSQPFWRSGPWNGQVFIGLASNLMYTSAYLNGFSIGRGENDTVEITYTLPNNSFFGTIVVSPEGKLVYTAWINRFLVGKRVFQENDCDVYGFCGPYGSCDSNNSPICTCLRGFEPRNVDEWNRQNWTSGCVRKDALQCERVKNGSEAGEGDGFLKLQMTKVPDFAQQSYLSVDACRTECLKNCSCTAYAYDDGIGCLSWSGKLIDIVRFSSGGVDLYIRQPHSELLDVDGKRNVTAIIIVSVIVGAVIVATCTYFLWSWTSKRTVRRKERQGSLVLNTGETHLENRSVGLIGDVKQVKIEDLPLFDFRIIATSTNNFDSANKLGQGGFGSVYKGELQDGQEVAVKRLSRASGQGIEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNNSLDFYLFDQVKKKVLDWQKRLNIIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDGELNPKISDFGMARIFGGSENEANTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYKHEQSLSLLGYAWKLWNEEEIVSLIDPDISNPDCVDHILRCIHIGLLSVQEFAKERPTMATIVSMLNSEIVNFPAPRQPAFTQRQIEQSGDSSQLSHDSNSINNVTVTNLQGR. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05001 867 Pfam Protein tyrosine and serine/threonine kinase 552 819 IPR001245 GO:0004672|GO:0006468
Seca6g05001 867 Pfam D-mannose binding lectin 104 206 IPR001480 -
Seca6g05001 867 ProSiteProfiles PAN/Apple domain profile. 370 453 IPR003609 -
Seca6g05001 867 CDD STKc_IRAK 555 821 - -
Seca6g05001 867 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Seca6g05001 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 211 IPR036426 -
Seca6g05001 867 ProSiteProfiles Protein kinase domain profile. 549 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05001 867 Gene3D Transferase(Phosphotransferase) domain 1 625 828 - -
Seca6g05001 867 ProSiteProfiles Bulb-type lectin domain profile. 57 177 IPR001480 -
Seca6g05001 867 Pfam S-locus glycoprotein domain 238 348 IPR000858 GO:0048544
Seca6g05001 867 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 48 811 - -
Seca6g05001 867 Gene3D - 52 178 IPR036426 -
Seca6g05001 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 625 828 - -
Seca6g05001 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 53 177 - -
Seca6g05001 867 Gene3D Phosphorylase Kinase; domain 1 524 624 - -
Seca6g05001 867 CDD PAN_AP_plant 368 451 - -
Seca6g05001 867 CDD EGF_CA 317 349 - -
Seca6g05001 867 SUPERFAMILY Protein kinase-like (PK-like) 534 850 IPR011009 -
Seca6g05001 867 SMART ntp_6 380 452 IPR003609 -
Seca6g05001 867 Pfam PAN-like domain 381 438 IPR003609 -
Seca6g05001 867 SMART serkin_6 549 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g05001 867 CDD B_lectin 63 180 IPR001480 -
Seca6g05001 867 SMART blect_4 63 180 IPR001480 -
Seca6g05001 867 FunFam receptor-like serine/threonine-protein kinase SD1-8 524 624 - -
Seca6g05001 867 PIRSF SRK 29 867 IPR024171 GO:0004674
Seca6g05001 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 670 682 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05001 Seca-Chr6 117330011 117333775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g05001 537 845 Receptor kinase-like Gene Family AT4G05200 58.900 5.71e-126 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g05001 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05001 - - gmx:112998788 1291.56