Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04999 ATGAATCCAAAAATATCTGACTTTGGTTTGGCTAGAATACATAAAGGTGAAGATGAGGTTAATACCAAAAGGGTTGTTGGCACATATGGCTATATGTCCCCTGAATATGCAATGGAAGGATTGTTTTCTGAGAAATCAGATGTCTACAGTTTTGGAGTTTTGTTACTAGAAATTGTTAGTGGAAAAAGAAACACTAGCTTTCGTAATGATGAACAATCTCTCAGTCTCGTAGGATTTGCGTGGAATCTATGGAACGAAGACAAGATAAGGTCTATGATAGATCCAGATTTATCAGCTTCAGGTTCTGAGAATCATATTTTGAGGTGCATCCACATAGCATTTCTATGTGTGCAAGAAGTTGCAAAATCTAGACCAACTATGACTACTGTAGTCTTGATGCTTAATAGTGAGATTTCCCATCTCCCTCCTCCTAAGCAAGTTGCATTTGTGCAGAAGCATTATTCATCAAGTTTTGAGTCTTCTTCTCGGGAAAATCAGTGCAACTCCAATAATAATGTAACTCTTACTGAGATGCAAGGCAGATAA 546 0.3736 MNPKISDFGLARIHKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIVSGKRNTSFRNDEQSLSLVGFAWNLWNEDKIRSMIDPDLSASGSENHILRCIHIAFLCVQEVAKSRPTMTTVVLMLNSEISHLPPPKQVAFVQKHYSSSFESSSRENQCNSNNNVTLTEMQGR. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04999 181 Gene3D Transferase(Phosphotransferase) domain 1 1 147 - -
Seca6g04999 181 MobiDBLite consensus disorder prediction 160 181 - -
Seca6g04999 181 Pfam Protein tyrosine and serine/threonine kinase 4 132 IPR001245 GO:0004672|GO:0006468
Seca6g04999 181 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 14 139 - -
Seca6g04999 181 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04999 181 SUPERFAMILY Protein kinase-like (PK-like) 2 166 IPR011009 -
Seca6g04999 181 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04999 Seca-Chr6 117320906 117321752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04999 1 181 Receptor kinase-like Gene Family AT4G21410 52.406 3.64e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g04999 PK_Tyr_Ser-Thr 8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04999 - - pvu:PHAVU_006G194300g 328.176