Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04998 ATGAAAGTGCCAGACTTTGCAGAAAGGTCAGCTTCTTTGGAAAGTGAATGCAGAGCTCAGTGCTTGGAAAATTGCTCTTGCTTGGCATATGCATATGAGAGTGGTGTTGGTTGCATGGTTTGGAGCAGAGACTTGATAGACATGCAAAGATTCTCAAGTGGAGGGGTTGATCTCTACATTCGTGTGGCACCTTCAGAACTCGAAACAAATTCAGATAAAAGAAGAGACAAGAGAATAATCATTGCAGTTGCAGTGACTATAGGAGTGGTTACCTTAGCTGGCTGTGCTTATCTCTCATGGAAATGGACTACTAAACCTACAGTCAATACAGGAAAATTAATTTCACGAAGACAAAGAATGGAGAAGGAAACCCAGCAGAAACAAGAAAAACTAGACGATCAACAACCGCTTTTTAAATTTGAAGAGCTTGCAACTGCCACAAACAATTTTCACTCGGCCAACGTGCTTGGAAAAGGTGGTTTTGGTTTAGTATATAAGGGACAATTGAAAGATGGTCAGGAAATAGCAGTGAAAAGACTCTCAAAAACATCTGGACAAGGGTTAGAAGAATGTATGAATGAGGTATTAGTGATTTCAAAGCTTCAACATCGCAATCTTGTGAGACTTCTTGGATGCTGTATTGAACAGGAGGAAAGGATGTTGATCTATGAGTACATGCCTAACAAGAGTTTGGATGTACTATTGTTTGATCCAGTAAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAAGATTATTGAAGGAATCTCTCGAGGTTTGCTTTATCTCCACAGAGATTCTAGACTGAAAATTATACATCGAGATTTAAAGGTTAGTAACATCTTGTTGGATAAAGAGATGAATCCAAAAATATCTGACTTTGGTATGGCCAAAATCTTTGGAGGTAATGATATACAAGCTAGTACTAGCAGAGTTGTTGGGACATTTGGCTATATGCCTCCAGAGTATGCATTCCGAGGGTTGTTTTCTGAGAAGTCAGATGTGTTTAGCTTTGGAGTGTTGGTGCTAGAGATTATTAGTGGCAAAAAAATCAGTAGCTATTATGACTATGACCTATCATTGAGCCTCTTAGGATTTGCATGGAAATTATGGAATGAAAATGACATGCAATCCCTGATAGACCAAGAAATATGTAATGAAGATCCAGATTATATGAAAGAGATTTATAGATGCATACACATTGGACTTCTTTGTGTACAAGAATTTGCAAAAGAGAGGCCGAGTATGGGTACAGTAGTTTCAATGCTTAATAGTGAGATTGTGAATCTGCCTCTCCCATCACGTCCCGCATTCAGCGAAAGGCAAATTTTATGGACTGCAGAATCATCTTCTTCTCATCAGCAGAACCACAAAACACACTCCATCAACAATGTTACTGTCACAGACATACAAGGTACTACTGCCAGGGATACCATTACATCGTCTCAATTCATCAGAGACTCAGAGACAGTAAACTCAAGTGACAGTGTCTTCAAACTTGGATTTTTCAGCCCTGCAAATTCAACAAACCGTTACTTAGGAATCTGGTATCTCTCTGACTCCAACGTCATATGGATAGCTAATAGAGACCAACCACTCAAAGACTCTTCTGGGGTTTTGAAGATCTCTGAAGATGGTAATCTTGTGATACTAGATGGCAAAAAACATGTAATTTGGTCGTCAAATGTGTCAAACACTGCAAACACTTCCACTGCTCAGCTTTTACGTTCTGGAAATCTAGTCCTGCAAGATGGAACCAGTGGACAGACCATATGGGAGAGTTTCAAACATCCTTGTGATGCAGCAGTGCCAACGATGAGAATCAGTGCTAACAGAGTCACGGGTCAGAAAATAAGGTTTATATCAAGGAAAAGTGATTCTGATCCTTCTACTGGGTACTTCTCTGCTAGTCTTGAACGTCTGGATGCACCAGAAGTGTTTTTCTGGATCAATGGAACTCGCCCATATTGGAGGACTGGTCCATGGAATGGTCGAATCTTCATTGGGACACCTCTGATGTCAACTGGGTATCTATATGGATGGAATGTGGGATATGAAGGGAATGAAACTGTTTATCTAACTTACAGTTTTGCTGACCAATCTGCATTTGGAATCCTTACCTTGAATCCACAAGGTAAACTTAAATTGGTAAGATATTATAACAGAAAGCAAGTGTTGGATGTGGTGTTGGAGAATTCTGTTTGTGATGTTTATGGCACATGTGGGGCATATGGAAGCTGTGATGTGCAGAGCTCACCAATCTGTACCTGTTTGAGAGGGTATGAACCCAGGAATCCAGAGGAGTGGAAAAGGCAAAATTGGACTAGTGGGTGTGTGAGGAAGGAACCACTGAAGTGTGAGAGGTTGAAAAATGGAAGTGAAACTAGCCAAGAAGATCAATTTTTGAAGCTTCAAATGATGAAAGTTCCAGACTTTGCAGAGAGGTTAGATGTTGAGGAAGGCCAATGTGAACCCATGTGCTTGAAGAATTGCTCTTGTTTGGCATATGCATATGATGCTGGCATTGGTTGCTTGTATTGGAGTGGACCTTTAATTGACTTACAACAATTCACAAGTGCAGGAATTGATCTTTACATCCGTTTAGCCCATTCAGAATAA 2619 0.4021 MKVPDFAERSASLESECRAQCLENCSCLAYAYESGVGCMVWSRDLIDMQRFSSGGVDLYIRVAPSELETNSDKRRDKRIIIAVAVTIGVVTLAGCAYLSWKWTTKPTVNTGKLISRRQRMEKETQQKQEKLDDQQPLFKFEELATATNNFHSANVLGKGGFGLVYKGQLKDGQEIAVKRLSKTSGQGLEECMNEVLVISKLQHRNLVRLLGCCIEQEERMLIYEYMPNKSLDVLLFDPVKKKDLDWPKRFKIIEGISRGLLYLHRDSRLKIIHRDLKVSNILLDKEMNPKISDFGMAKIFGGNDIQASTSRVVGTFGYMPPEYAFRGLFSEKSDVFSFGVLVLEIISGKKISSYYDYDLSLSLLGFAWKLWNENDMQSLIDQEICNEDPDYMKEIYRCIHIGLLCVQEFAKERPSMGTVVSMLNSEIVNLPLPSRPAFSERQILWTAESSSSHQQNHKTHSINNVTVTDIQGTTARDTITSSQFIRDSETVNSSDSVFKLGFFSPANSTNRYLGIWYLSDSNVIWIANRDQPLKDSSGVLKISEDGNLVILDGKKHVIWSSNVSNTANTSTAQLLRSGNLVLQDGTSGQTIWESFKHPCDAAVPTMRISANRVTGQKIRFISRKSDSDPSTGYFSASLERLDAPEVFFWINGTRPYWRTGPWNGRIFIGTPLMSTGYLYGWNVGYEGNETVYLTYSFADQSAFGILTLNPQGKLKLVRYYNRKQVLDVVLENSVCDVYGTCGAYGSCDVQSSPICTCLRGYEPRNPEEWKRQNWTSGCVRKEPLKCERLKNGSETSQEDQFLKLQMMKVPDFAERLDVEEGQCEPMCLKNCSCLAYAYDAGIGCLYWSGPLIDLQQFTSAGIDLYIRLAHSE. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04998 872 CDD STKc_IRAK 156 424 - -
Seca6g04998 872 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Seca6g04998 872 Gene3D Phosphorylase Kinase; domain 1 110 225 - -
Seca6g04998 872 ProSiteProfiles Protein kinase domain profile. 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04998 872 SUPERFAMILY Protein kinase-like (PK-like) 133 453 IPR011009 -
Seca6g04998 872 ProSiteProfiles PAN/Apple domain profile. 1 63 IPR003609 -
Seca6g04998 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 595 - -
Seca6g04998 872 Pfam S-locus glycoprotein domain 657 764 IPR000858 GO:0048544
Seca6g04998 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 226 431 - -
Seca6g04998 872 ProSiteProfiles Bulb-type lectin domain profile. 476 595 IPR001480 -
Seca6g04998 872 CDD B_lectin 482 598 IPR001480 -
Seca6g04998 872 Pfam PAN-like domain 795 854 IPR003609 -
Seca6g04998 872 Pfam PAN-like domain 1 48 IPR003609 -
Seca6g04998 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Seca6g04998 872 CDD PAN_AP_plant 1 63 - -
Seca6g04998 872 ProSiteProfiles EGF-like domain profile. 731 767 IPR000742 -
Seca6g04998 872 SMART serkin_6 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04998 872 ProSiteProfiles PAN/Apple domain profile. 786 869 IPR003609 -
Seca6g04998 872 Gene3D - 471 596 IPR036426 -
Seca6g04998 872 Pfam Protein tyrosine and serine/threonine kinase 153 423 IPR001245 GO:0004672|GO:0006468
Seca6g04998 872 SMART ntp_6 796 868 IPR003609 -
Seca6g04998 872 SMART ntp_6 1 62 IPR003609 -
Seca6g04998 872 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 415 - -
Seca6g04998 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 225 - -
Seca6g04998 872 Pfam D-mannose binding lectin 523 624 IPR001480 -
Seca6g04998 872 Gene3D Transferase(Phosphotransferase) domain 1 226 429 - -
Seca6g04998 872 SMART blect_4 482 598 IPR001480 -
Seca6g04998 872 SUPERFAMILY alpha-D-mannose-specific plant lectins 513 664 IPR036426 -
Seca6g04998 872 CDD PAN_AP_plant 783 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04998 Seca-Chr6 117313027 117320104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04998 62 443 Receptor kinase-like Gene Family AT4G05200 51.157 3.04e-119 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g04998 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04998 - - pcin:129286414 1018.07