Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04994 ATGAAGAAGTGCGAGCTCTGCAACAGTCCCGCAAAGTTGTTCTGTGATTCAGATCAAGCCAGTCTTTGTTGGGAATGCGATGCTAAGGTTCACACTGCAAATTTCCTCGTCACCAAGCATCCCAGGATTCTCCTCTGCCATGTTTGTCAATCGCTAACGGCTTGGCATGGCACAGGACCAAAGTTTGTACCAACCTTCTCCGTTTGCAACAACTGTGTTAGTAACAATAACAGTACCTGCAACCAACAGAATCATGATGATGATGACGATGACGATGATGATGGTGATGATGATGGCGAGGATGGTGTAGAAAACGATGATGATGGTGATGAGGACGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCGACACCGCCACAACCGGTTTCGAATTCTTCAAGTAGTGCAACTAGTTCTACCTGCGGATTCTCTAATGGTGAAGAAGGTGGCTCAGACTAA 465 0.4581 MKKCELCNSPAKLFCDSDQASLCWECDAKVHTANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTFSVCNNCVSNNNSTCNQQNHDDDDDDDDDGDDDGEDGVENDDDGDEDEDDEENQVVPWTSTPPQPVSNSSSSATSSTCGFSNGEEGGSD. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04994 154 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 145 - -
Seca6g04994 154 CDD Bbox1_BBX-like 3 45 - -
Seca6g04994 154 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Seca6g04994 154 SMART bboxneu5 1 45 IPR000315 GO:0008270
Seca6g04994 154 MobiDBLite consensus disorder prediction 85 119 - -
Seca6g04994 154 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca6g04994 154 MobiDBLite consensus disorder prediction 120 154 - -
Seca6g04994 154 MobiDBLite consensus disorder prediction 79 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04994 Seca-Chr6 117291794 117292258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04994 2 110 C2C2-CO-like Transcription Factor Family AT4G27310 48.649 6.57e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca6g04994 zf-B_box 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04994 - - gmx:100805832 189.889