Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04983 ATGGGGAGAACACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGTCCATGGACAACCGAGGAGGATCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTTCGGTGGACAAACTATCTCCGACCAGACATAAAACGAGGCCGGTTTTCATTTGAAGAGGAGGAGACAATTATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAACACTCACATCAGAAAAAGGCTTTTGAGGATGGGAATTGATCCTGTGACACACAGTCCAAGACTTGACCTTTTGGACCTCTCTTCCATTCTATGCTCATCTCTCTACGGTTCATCATCACAAATGAACATACAGAGGCTCCTTGGCTTGCAGTCTATGGTGAATCCAGAGCTTCTAAAGTTGGCTTCCTCACTCATCTCCTCACAGCAACGTGAAGACTTCAACTTGTGTGACCAAAGTGGTCAACAGAACCACCTCTGCAATTCCCAAATCCAGAATCAAACTCCACGTTTTGTCCAATTTCAAGACACAATTCAAGAAGTGCCAGCTTGTGTTTCATTGCCTTTAACTCAACCACAATTGCTTGAACCCACTATGGATCACCAATATGATCCATCAAGTAATTTCACCAATTTTAGTAATTGGGACAAAAATGGAACCTTCACAGATGACCACTATATCCCTCAGTTATCAAGCTGCTATAATGATTATTATAGTTCTGATAATCAAAATCTCATGTATCCTCCATTGTCCGAAACTTCAACCTTCCATTCCAATAACAGCAACCACAACTTGAGCAGCTTCACTTCAGTACTATCGACACCATCTTCTAGTCCCACACCGTTGAATTCCAACTCCACGTATATCACCGGGAGCAACACAGAGGATGAAAGAGAAAGCTATGACAGTAGTAACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1071 0.4183 MGRTPCCDKNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSSQMNIQRLLGLQSMVNPELLKLASSLISSQQREDFNLCDQSGQQNHLCNSQIQNQTPRFVQFQDTIQEVPACVSLPLTQPQLLEPTMDHQYDPSSNFTNFSNWDKNGTFTDDHYIPQLSSCYNDYYSSDNQNLMYPPLSETSTFHSNNSNHNLSSFTSVLSTPSSSPTPLNSNSTYITGSNTEDERESYDSSNMLKFEIPDILDVNEFM. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04983 356 Gene3D - 13 66 - -
Seca6g04983 356 CDD SANT 69 112 IPR001005 -
Seca6g04983 356 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca6g04983 356 CDD SANT 16 61 IPR001005 -
Seca6g04983 356 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca6g04983 356 SMART sant 13 63 IPR001005 -
Seca6g04983 356 SMART sant 66 114 IPR001005 -
Seca6g04983 356 MobiDBLite consensus disorder prediction 302 329 - -
Seca6g04983 356 FunFam MYB-related transcription factor 13 66 - -
Seca6g04983 356 FunFam Transcription factor MYB39 69 130 - -
Seca6g04983 356 Gene3D - 69 116 - -
Seca6g04983 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca6g04983 356 MobiDBLite consensus disorder prediction 302 336 - -
Seca6g04983 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca6g04983 356 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca6g04983 356 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca6g04983 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 275 - -
Seca6g04983 356 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04983 Seca-Chr6 117204963 117206778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04983 1 356 MYB Transcription Factor Family AT4G21440 55.827 4.39e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g04983 Myb_DNA-binding 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04983 K09422 - gmx:778071 498.434