Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04976 ATGGGTGATGAACAACGAGAAGCCACCGTCAAGCTCATCTCTTCCTTGATCTCCCTCTCTCACTCGATTAGGGTCTTCGCTGGAAAATGGCAACTGATACGGAACAAGCTGGAGGAGCTTCATTCGGGACTAACCGCCGGCGAGAACCAGTCACTCTCCGGCGTGTTCCCGGCGATAGCTGCCACCGTGGAGGAGTGCCACGAGCTGGCTCGGCGTTGCGTGGATCTGTCGTACAGCGGGAAGCTGCTGATGCAGAGCGATTTGGACGTGACGTTGGGGAAGTTGGAGGGGCATGTGAAGAAGCTCTCTGAGATATACAAGAAGGGTATTCTCTCAAATGGGTATGCTGTGGTTGTTTCAAGGCCTTGCCTTGGTGCTTCCAAAGACGACATGAGGTTCTACCTCAGGGACTTGCTCACTAGGATCAAAGTGGGTGATTTCGGTATGAAGAAGCAGGCTTTGATCAACCTGCATGAGGTTGTTCTCCAAGATGACAAGTATGTCATGTTGATTCTGCAAGTTACTGACTTTGTTCATGTGTTGGTGGATTTTCTGGGTTCCCCTGAGATTGAGATTCAGGAGGAATCTGCCAAGGTGGTTTCTGTCATTGTGGGGTTTGATTCTTGTAAAGGGGTTTTAATTGCTGCTGGGGTTATTGCTCCCTTGATTCGGGTTTTGGAATGTGGGAGTGAATTGGGGAAGGTTGGTGCTGCTAGGTGTTTGCACACGTTGACTGAGAATTCGGATAATGCTTGGTCTGTTTCAGCGCATGGGGGTGTCACCGCCTTGTTGAAGATTTGTGAAAGTTCGGATTCTAAAGGGGAATTGATTGGTCCTATTTGTGGGGTGTTGAGGAATCTTGCTGGTGTTGAAGAAATAAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACGTTTATCAGGCTTGTGAGATCCAAGGATGAAACCATTCAGGTAAGTTCCATAGAGTTCATTCAAAACATTGCCTCTGGGGATGAATTGGTTAGGCAGGTGGTGATTAGGGATGGTGGAATTCGTGTCTTCTTACGTGTTTTGGATCCTAAATGGACGTGTTCATCTAAAACCAGAGAGGTGGTGATGAGGGCTGTTGAAAATTTGTATTTTTCTTCACCTGGTTCTGTAAGTATTTTGATGAGTTATGGCTTTGTGGATCAACTGCTATATTATGTTAGAAATGGGGAGGTTTCAATTCAAGAGTTGGTGCTTAAAGTGGCATTTAGACTGTGTGGAACTTCAGAGGAGGCTAAGAAAGCGTTGGGTGATGCAGGCTTCATGGCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAGACACTATCTGGCATGGTTATGGTGCCAAAAAATAGAAAGAAATTTGTGCAGGATGACCAAAATATTGCTCTCCTTCTGCAATTGCTAGACCCAGAGGAGGGAAACTCAGGTAATAAAAAGTTCCTAATCTCTATCTTAATGTCATTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTTAGTTCTGGGTATGCCAAAAACATAGAGAGACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1665 0.4565 MGDEQREATVKLISSLISLSHSIRVFAGKWQLIRNKLEELHSGLTAGENQSLSGVFPAIAATVEECHELARRCVDLSYSGKLLMQSDLDVTLGKLEGHVKKLSEIYKKGILSNGYAVVVSRPCLGASKDDMRFYLRDLLTRIKVGDFGMKKQALINLHEVVLQDDKYVMLILQVTDFVHVLVDFLGSPEIEIQEESAKVVSVIVGFDSCKGVLIAAGVIAPLIRVLECGSELGKVGAARCLHTLTENSDNAWSVSAHGGVTALLKICESSDSKGELIGPICGVLRNLAGVEEIKRFMVEEGVVSTFIRLVRSKDETIQVSSIEFIQNIASGDELVRQVVIRDGGIRVFLRVLDPKWTCSSKTREVVMRAVENLYFSSPGSVSILMSYGFVDQLLYYVRNGEVSIQELVLKVAFRLCGTSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAETLSGMVMVPKNRKKFVQDDQNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04976 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 302 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 332 375 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 290 330 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 164 205 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 419 459 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 206 246 IPR000225 GO:0005515
Seca6g04976 554 SMART arm_5 247 289 IPR000225 GO:0005515
Seca6g04976 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 553 - -
Seca6g04976 554 SUPERFAMILY ARM repeat 136 535 IPR016024 -
Seca6g04976 554 Gene3D - 135 543 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04976 Seca-Chr6 117157009 117158673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04976 118 406 U-box Gene Family AT2G23140 21.993 1.22e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04976 - - gmx:100783537 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04966 12 135395708 135397441 Seca6g04976 6 117157009 117158673 PCT