Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04973 ATGAATAGAGGAAATAGAGGTCCTCCTCATGCTTGTCCTCTATGCAGGCGTCAACGCAGAAGATGCGATGGCAACTGTGAGTTTGGGCAATACTTCCCTGCCAATAGAGTAGAAGAATTTGAAAATGCATTCAGGCTTTTTGGTCTGAATAACATGCTGAGGATTCTGCGGACGGTAGAACCTCAGCAAAGGCAAGCTGCTGCAGATTCAATAATGATAGAGGGTACTGCATGGAGAAATAACCCTCCTCATGCTATACTTGGTCATGAGTTGGAACTTAGATCACAGATTCGATCTTCTTTCAGGGAATTGCAATCTGTAAACCAACTCCTTTCATTTTTTAGAAATCAAGCTACAGGAACACGAGGGCCAAACCCTAACATGCAAATGGGTAACACTTCTCAAACTGTTGGTGTAGCCACACAATTGTCCACCTTGGCTGCAGGAACAGTAAGTCTTCTTGTTAATTTTTTTTTATTTATCATAAAAATACTATTTAATTTAAATTCAATAATTATTAAGTATCATTATTCAGCCTGCTGGAAACATGGGCGGAATGGATCCCATTAA 570 0.4 MNRGNRGPPHACPLCRRQRRRCDGNCEFGQYFPANRVEEFENAFRLFGLNNMLRILRTVEPQQRQAAADSIMIEGTAWRNNPPHAILGHELELRSQIRSSFRELQSVNQLLSFFRNQATGTRGPNPNMQMGNTSQTVGVATQLSTLAAGTVSLLVNFFLFIIKILFNLNSIIIKYHYSACWKHGRNGSH. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04973 189 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Seca6g04973 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 119 - -
Seca6g04973 189 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04973 Seca-Chr6 117126109 117126678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04973 11 130 AS2 family AT3G13850 35.833 6.87e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca6g04973 LOB 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04973 - - aprc:113866120 133.265