Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04968 ATGGCGTCTGCTTCGTCCTCTTCTTCCTCCTCCAAGCTGTGCTTCAATTCTGACTGCAAAGAATTGAAGTCTGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAACGGAGACCTAGCCGAGCTTTGCGATCGATGCGGTTCCGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCTAATGCTTCAGGTTGGAGAAATTGTGAGACTTGTAGGAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCACGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAGTGCTTTGCATGTGCCCGCAAAAATATTATTTTGCCGTCTAACCTGCCGTGGTCACAATCCTTTTCCCTTCAAAATCGTATATCGGAGAGACTTAGAGACCTGTCTGCCAAAAGTTGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCCTCCGACCTGCTTCCAGATGTGCCATCTCTAGTTGAATTACCAAATAGCTTTGACAAAATTTATAGCAATGAAAGGTTACCTGCCTCGTCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGTTAATTGGAGCGTCAAGCTTGGTTCACGGGAAATGATGCTTATGAATGGTTTGAGGAATGAGGACAAATCAAGTTCTTGTTTAAATATGTGCCAACAGCCTTCTATGAAGGAAGATTCATCTCCTCAACCATTTGGTTTGTCTGTAACTTATCCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCTCCAGGAAAGCAATTCAGTGGCACTATGCATTTAGCACTTGACACATCTGGTGAAGCTCAAGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCGAGGTGTACTGATCTGGAGCTACAGCAAATATCTATTGATTCTAATTCTGTAATTACACCCTTGTTTCAAAAAACATTGAGTGCTAGTGATGCTGGACGCATTGGGCGTTTAGTGCTACCCAAAAAGTGTGCTGAGACCTACTTTCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACTTTTAGCCGGTTGGAGCCAGAAGGGAGGTTAGTTATGGGATTTAGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGATAATGAAACTAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAGCAGCATATTGGGTTCAAAGAGTAAACGTCTAAAAATTGAAAATGAGGATCTAATAGAGCTGAAAATTACATTGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAATCATGTTCCAAGTATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGTACCTGTCTTCTTGCTTCATTTCAGAAATTGTTTTGAACTGCTAATGTTATTATACTTTTAA 1710 0.4263 MASASSSSSSSKLCFNSDCKELKSERPKKGWRLRNGDLAELCDRCGSAFEEGRFCEIFHSNASGWRNCETCRKRIHCGCIVSSHAFVLLDPGGIECFACARKNIILPSNLPWSQSFSLQNRISERLRDLSAKSWNQLAGSGPVPWKQAPSLFNSASSSDLLPDVPSLVELPNSFDKIYSNERLPASSLEKKNEDLSGISVNWSVKLGSREMMLMNGLRNEDKSSSCLNMCQQPSMKEDSSPQPFGLSVTYPSPNERNGQIGVTGSHPQQTPPPPGKQFSGTMHLALDTSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNETNKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLKIENEDLIELKITLQEAQGLLRPPPNHVPSIVVIEGFEFEEYEVPVFLLHFRNCFELLMLLYF. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04968 569 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Seca6g04968 569 SMART B3_2 337 438 IPR003340 GO:0003677
Seca6g04968 569 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Seca6g04968 569 MobiDBLite consensus disorder prediction 438 459 - -
Seca6g04968 569 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 11 553 - -
Seca6g04968 569 MobiDBLite consensus disorder prediction 440 456 - -
Seca6g04968 569 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Seca6g04968 569 MobiDBLite consensus disorder prediction 231 279 - -
Seca6g04968 569 CDD B3_DNA 335 436 IPR003340 GO:0003677
Seca6g04968 569 MobiDBLite consensus disorder prediction 231 266 - -
Seca6g04968 569 Gene3D - 315 441 IPR015300 -
Seca6g04968 569 SUPERFAMILY DNA-binding pseudobarrel domain 334 437 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04968 Seca-Chr6 117059639 117067996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04968 11 555 B3 DNA Binding Superfamily AT4G21550 42.143 1.94e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g04968 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04968 K09287 - gmx:100782114 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04968 6 117059639 117067996 Seca6g04968 6 117059639 117067996 ECH