Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04960 ATGTTGGAAGGTCTATTAGGTACTGTGGATAGGATATCAGCAAGCAGACAGAAGGGAAATTTTATTTTGAATGAATTGAAATATGCATGCTTGTTGGAAAGTGCCGCAGAAAATGTGAAGGAATGTGTCAAAATGCATGACTTAATACGAGATATGGCCATTACAATCATGAGAACAGATCCTAATTGGCACTGCATTGTCAAAGCTGGTAGTGGACTCACAAAACCTCCACATATTGATGAATGGGTGGAAGATGTTCAAAGGGTGTCACTGATGAAAAATGACTTGAAAAATATCTTTCTTGGCAATCCTCCACCATGTCCAGGTGTGACTTCCTTGTTATTGCAATACAACTCTTTCCCTCAAAACCTACCATATGACTTCTTTGATTCCATGCCCAGCCTAAAGGTTCTTGATGTCTCTTACACCGGCATTGATTCCCTGCCTGGATCATTTTCTAACTTGGTGAACCTATGTGCCTTGTTAGTCAGCAATTGCTGGAACTTAAGAGCAATCCCTTCTTTAGCAAAACTCATCAAGTTAATGGCTTTAGACCTTCCTTGTTCCAGAAACATCAAAGAACTACCACAGGGAACAGAACAGTTAGGCAATCTGAGAAGGCTGAATATTTCCAACACCATGATTAAAACCTTACCATCTGGTCTGCTGTCAGCATTAACTCTTTTGGAAGAGTTATTGGCATCTAATGCTCTAGTCTTTCAAATACCACTGCCACCAACCAGTTGTGAAATCAGTATTGATGAAATCATCTCCTCCTCCAGTTTATCTTCTCTTGAAGTTGATTTCTGGTATTTTGACCTTTATGATTTATATACTAGATCTGGTCACTGGGTTCAGCTAGATAAGTTCAAGTTTAATGTTGGACCTGGAGAGCTTCAACAAGTTTCAGAGAAAAGGAGTGTGGAATTTCTTGGGATATCCATTGCAAAAGGACTTCTGATCCCAACAAATACTACTGAGTTGAAGTTCATTGATTGTCATGATGTTACAGAGCTAACTACTTGTCTGATGCATGTTGAGAAGCTTAAAAAGTGTACAATAGTATGCTGCTACAGTGTAGAATACATTGTTGAACCTGGGAGGAATGATTTGTCTATGCTGGAGACATTGGTGCTGAGATTTTTAATCAATTTGCAGATGATATGCAGGGAAGTGGTGACACCATCTACACTAATGAGCCTGAAGATAATCAATGTGGAATTTTGTCCAAATTTGAAGAATCTATTCTCAGGGAACCTCTTGCTCCAACTATTGGATCTTGAAGAAATTAGAGTCAGCCACTGTAACAGTATGGAGGACTTGATGAGATGGGAAGGAGGAAGCAATAATATTTATGCTGCTAAAATCCTCTTGCCAAAATTACAGAAACTGAGATTGGAATCTATGCCTAAATTAAAGGAGATATATAGTGGATTCATCAGTTTTGGCTCTCTATGTTCTGTTCATGTCATTTCTTGTGATGCTTTGAAGAGGCTACCCTTTGAGCTAGATGATGCAGTAGGCCTTCAACAACAACAATTGGTAGCACCTGGTTTGGAAATAAGAGGAACAAAATATTGGTGGGAGTCACTTGAGTGGGATGAACCTGCTGGCTGCTGCCAAACAAATGATGGAAGCTTGTTTCTTAGAGCTGCCAATGGTGTCAGATCAAGTTGGTAG 1680 0.3952 MLEGLLGTVDRISASRQKGNFILNELKYACLLESAAENVKECVKMHDLIRDMAITIMRTDPNWHCIVKAGSGLTKPPHIDEWVEDVQRVSLMKNDLKNIFLGNPPPCPGVTSLLLQYNSFPQNLPYDFFDSMPSLKVLDVSYTGIDSLPGSFSNLVNLCALLVSNCWNLRAIPSLAKLIKLMALDLPCSRNIKELPQGTEQLGNLRRLNISNTMIKTLPSGLLSALTLLEELLASNALVFQIPLPPTSCEISIDEIISSSSLSSLEVDFWYFDLYDLYTRSGHWVQLDKFKFNVGPGELQQVSEKRSVEFLGISIAKGLLIPTNTTELKFIDCHDVTELTTCLMHVEKLKKCTIVCCYSVEYIVEPGRNDLSMLETLVLRFLINLQMICREVVTPSTLMSLKIINVEFCPNLKNLFSGNLLLQLLDLEEIRVSHCNSMEDLMRWEGGSNNIYAAKILLPKLQKLRLESMPKLKEIYSGFISFGSLCSVHVISCDALKRLPFELDDAVGLQQQQLVAPGLEIRGTKYWWESLEWDEPAGCCQTNDGSLFLRAANGVRSSW. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04960 559 SMART LRR_typ_2 132 154 IPR003591 -
Seca6g04960 559 SMART LRR_typ_2 202 225 IPR003591 -
Seca6g04960 559 Gene3D Ribonuclease Inhibitor 416 514 IPR032675 -
Seca6g04960 559 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Seca6g04960 559 Pfam Leucine rich repeat 180 235 IPR001611 GO:0005515
Seca6g04960 559 Gene3D Ribonuclease Inhibitor 51 273 IPR032675 -
Seca6g04960 559 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 8 500 - -
Seca6g04960 559 SUPERFAMILY L domain-like 44 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04960 Seca-Chr6 117009062 117010741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04960 127 233 WRKY Transcription Factor Family AT4G12020 37.037 1.83e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04960 - K13459 ahf:114924594 609.372