Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04948 ATGGGGACGAAGGTGATGGGGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCATGGGACCCGAAACTGGAACGTTGTCGCCGCCGAGCTCCGAGCCCGAACCCTTTCTCCTTACACTTACACCCCTGAGGTCTGTAAAGCCAAGTATGAAGACTTGCAACGGCGGTATTCTGGGAGTAAGGCTTGGTTTGAGGAGCTTAGGAAGAGAAGAGTAGAAGAGCTGAAGAGAGCTCTAGAGCTATCTGAAGATTCAATTGGGTCTCTTGAGTCAAAACTTGAACTCCTCAAGGCTGGGAAGAGTGAGAAAAGGGATGATTGTCATCTTGACAATGGCTCAGGAAGTCCAGAATCACATGTACCTTCACAAAAATTGGAAAGAGTTGAATCTTCCACTAAAGAGACATCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACCAGGACTAACTGGTCTCCTGAATGCCAGGTTCCAGCTGGGTCTGCTGGAGATTTGGAGACTAAGCCTGAAGTTTCACACTCTACTGATAAGGTTAAGGTTTTGAATGTAGATAAGTTAGCATATACTATATATGAAGGACAAGGAAGAAGTTTTAAAAAACGGAGAGGGCAAAGGAAGAGGAAGGATTGTAGCAGAAATATTAAGGAAGCAAGTGTTGGAGAAAGTGACTTAATAGATTCAGCTGATGTTGTGTCCTTGTGTAAAGAAAGTTCTACCAACAACTATGGTGAAGTTGCCAAATCTTCAGGTGTAGATGATCAAAATAGGAACTTTAAAAAGACAGGGCCAGAAGACATGAAGGAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCATCTGCTTTCCGCCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATTCGGAGGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACCAAACAATTAAGTCAGCTACAGAGCTTTTCCGAGACTTGTTGCTCCTCACTAACAATGCTTTAGTCTTCTACTCCAAGAGCACTCGTGAGTATAAATCTGCTCTATTGCTGAGAGACCTTGTCACCAAAAAAATGAGGGAGAGTTTAAAGGGTATTAACAGAAAAGTCCCAGAGGCCAATGTGCCTATTAAGTTACCTGTACAAATGCAAAATCCTCATGTGAAACCAAGAAGTGTACGCCCAGGTAACAGAAAAATTGTTGCAAAAGCAATTGGTAGCAGCAACAACTCTGCATCTGGGGTGTCACATGCAGCAAGAAAACCCACTAAAGTTGATTCCCCATCTTCAGTAGAATCCTTAACTGTCAAGAAGAAAGCTTTTGGTCGACCAAAAAAGGTTGGACGTGGGACTGCAGCTCAAAAGCCTTCAACAACACCGTTGAAGGGAAAGAAAAGAGTTAGAACAAAGTGA 1431 0.4375 MGTKVMGRWGTWEELLLGGAVLRHGTRNWNVVAAELRARTLSPYTYTPEVCKAKYEDLQRRYSGSKAWFEELRKRRVEELKRALELSEDSIGSLESKLELLKAGKSEKRDDCHLDNGSGSPESHVPSQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECQVPAGSAGDLETKPEVSHSTDKVKVLNVDKLAYTIYEGQGRSFKKRRGQRKRKDCSRNIKEASVGESDLIDSADVVSLCKESSTNNYGEVAKSSGVDDQNRNFKKTGPEDMKEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISNQTIKSATELFRDLLLLTNNALVFYSKSTREYKSALLLRDLVTKKMRESLKGINRKVPEANVPIKLPVQMQNPHVKPRSVRPGNRKIVAKAIGSSNNSASGVSHAARKPTKVDSPSSVESLTVKKKAFGRPKKVGRGTAAQKPSTTPLKGKKRVRTK. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04948 476 Coils Coil 77 97 - -
Seca6g04948 476 MobiDBLite consensus disorder prediction 109 178 - -
Seca6g04948 476 CDD Bromodomain 271 365 - -
Seca6g04948 476 SUPERFAMILY Bromodomain 272 371 IPR036427 GO:0005515
Seca6g04948 476 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
Seca6g04948 476 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 3 434 - -
Seca6g04948 476 Pfam Bromodomain 273 354 IPR001487 GO:0005515
Seca6g04948 476 Gene3D - 260 373 IPR036427 GO:0005515
Seca6g04948 476 MobiDBLite consensus disorder prediction 412 476 - -
Seca6g04948 476 CDD SANT 8 55 IPR001005 -
Seca6g04948 476 MobiDBLite consensus disorder prediction 140 163 - -
Seca6g04948 476 SMART bromo_6 266 370 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04948 Seca-Chr6 116916972 116920720 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca6g04948 Bromodomain 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04948 - - gmx:100804245 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04896 12 133664946 133669996 Seca6g04948 6 116916972 116920720 PCT